BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946938
Length=1066
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35810.1 | Symbols: | Ankyrin repeat family protein | chr5:... 388 4e-107
> AT5G35810.1 | Symbols: | Ankyrin repeat family protein | chr5:13993428-13994549
REVERSE LENGTH=1044
Length=1044
Score = 388 bits (210), Expect = 4e-107
Identities = 716/949 (75%), Gaps = 79/949 (8%)
Strand=Plus/Plus
Query 120 CTACTCTTTGATGCTGCATC-ATGTGGAAATGTCGAG-TTCCTAGTCATTCTTATTCGTT 177
|||||||||||||||||| | || ||||||| | ||| || || | ||||| |||||||
Sbjct 100 CTACTCTTTGATGCTGCA-CAATCTGGAAATCTTGAGCTT-TTACTTATTCTCATTCGTT 157
Query 178 CGTATCCAGATTTGATATGGAAAGTCGAT-AGAAGAAACCGAAGCTTGTTTCACATTGCT 236
| ||||||||| ||||||||| || ||| | ||| |||| ||||||||| |||||||||
Sbjct 158 CTTATCCAGATCTGATATGGACGGTGGATCATAAG-AACCAAAGCTTGTTCCACATTGCT 216
Query 237 GCTATAAATCGTCATGAAAGCATCTTCAACATCATATATGAACTCGGAGCAATCAAGGAC 296
||||||||||||||||||| ||||| || | || ||||||||||| || ||||| ||
Sbjct 217 GCTATAAATCGTCATGAAAAAATCTTTAATAGAATCTATGAACTCGGGGCCATCAAAGAT 276
Query 297 TTAATAGCT-TCT-TATCGAGAA-GAAGCCA-CAAATAATACTCTGTTGCATCTTGTTGC 352
|| |||||| | | || ||||| ||| ||| | | || || ||||||||||||| ||
Sbjct 277 TTGATAGCTATGTATAAAGAGAAAGAATCCAACGAC-AA--CT-TGTTGCATCTTGTGGC 332
Query 353 AAGCTTGCCTCCTC-ATGATCGACTACATA-TTGTATCAGGGGCTGCACTTCAAATGCAA 410
| | || || |||| | || | |||| | |||||||||| || |||||||| ||||||
Sbjct 333 ACGTTTACCACCTCCAA-ATAGGTTACA-AGTTGTATCAGGAGCAGCACTTCAGATGCAA 390
Query 411 AGAGAGATTCTTTGGTTCAAGGCTGTGAAAAAGATTGTTCCTCGT-TCATACATCAAATC 469
|||||||||||||||| ||||||||| ||| |||| ||||||||| | |||||||||| |
Sbjct 391 AGAGAGATTCTTTGGTACAAGGCTGTTAAAGAGATAGTTCCTCGTGT-ATACATCAAAAC 449
Query 470 AAAGAATAAAGAAGGGGAATTAGCGCAAGA-CATCTTTACTAATG-GACACAAAGAA-TT 526
|||||| ||| ||| ||| | ||||| || | | ||||| || | | || | || ||
Sbjct 450 AAAGAACAAAAAAGAGGAGGTGGCGCATGATC-TATTTACGAAAGAG-CATGAC-AACTT 506
Query 527 ACGGAAAGAAGGAGAGAAATGGATGAAAGATACTGCAACAT-CATGTATGCTTGTAGCAA 585
||| |||||||||||||||||||||||||| ||||| || | |||| || |||||| |||
Sbjct 507 ACGCAAAGAAGGAGAGAAATGGATGAAAGAAACTGCGAC-TGCATGCATTCTTGTATCAA 565
Query 586 CGCTAATAGCAACGGTAGTTTTTGCCGCGGCCTTTAC-CGTACCAGGAGGGAACAAT--G 642
| || |||||||| || || ||||| || |||||||| | |||| || || ||| || |
Sbjct 566 CACTGATAGCAACTGTGGTCTTTGCAGCTGCCTTTACTC-TACCTGGTGGAAACGATACG 624
Query 643 AA-G---A-AT-----CA---GGACTTCC-TATCCTCCaaaaaa-aGAAATGGTTT-AAT 686
| | | || || || ||||| || | | | ||| || |||||| ||
Sbjct 625 AGTGGCGACATAAAAACACTAGG-CTTCCCTA-CTTTTAGAAAGGAGTTCTGGTTTGAAG 682
Query 687 ATATTTATCCTATCGGATGCGGTCGCGCTA-TGCTCCTCC-TCAACATCTAT-AGTGAT- 742
| |||||| |||| ||| |||| || || | || || | | ||||||| | ||||
Sbjct 683 -TGTTTATCATATCAGATTCGGTTGCCCTCCTA-TCATCTGTGA-CATCTATTA-TGATA 738
Query 743 TTTCTTGTCAATCTTGACGTCAAGATATGCTGAAGATGATTTTCTTGT-GTCATTACCCT 801
||| ||||||||| |||| || | ||||| |||| | | |||| | | | |||||
Sbjct 739 TTT-TTGTCAATCCTGACATCTCGTTATGCAGAAGCT-AGTTTCCAGACGACTTTACCAA 796
Query 802 C-AAGGCTAATGTTGGGACTTTTGGCATTGTTTGTCTCCATTATCGCAATGGT-CATAGC 859
| ||| ||||||||||||||||| ||||||||||| || ||||| ||||||| | | ||
Sbjct 797 CGAAG-CTAATGTTGGGACTTTTAGCATTGTTTGTTTCAATTATTTCAATGGTTCTT-GC 854
Query 860 TTTCTGTGCGACGTT-ATTCTTGATCTATGACCGGAGA-C-TCGCGTGGAATTTAG-CCT 915
||| ||||| || || ||||||| ||| | ||| | | |||| ||| |||
Sbjct 855 CTTCACAGCGACATTGAT-CTTGATCCGTGATCA-AGAACCTAAA-TGGAGCTTAATCCT 911
Query 916 TCATTA-TTTCACTTG-CTTCAATCACAGCTTTTTCGTTTGCCTTGCTACATGTGCAGCT 973
| ||| ||| || || |||| ||| ||| | || |||| || | ||| | |||||
Sbjct 912 -C-TTAGTTT-ACGTGGCTTCTGCCACGGCTCTCTCATTTGTGGTGTTGCATTTTCAGCT 968
Query 974 TTGGTTTGACACACTTCGATCAGCCTAT-TGGTCCAAGTTCCTCTTTCA 1021
|||||||||||||||||| ||||||||| || || ||||||||||||||
Sbjct 969 TTGGTTTGACACACTTCGCTCAGCCTATCTG-TCTAAGTTCCTCTTTCA 1016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52208566800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5