BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946940

Length=518
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G14420.1 | Symbols:  | HR-like lesion-inducing protein-relat...   815    0.0  


> AT4G14420.1 | Symbols:  | HR-like lesion-inducing protein-related 
| chr4:8301946-8303915 REVERSE LENGTH=879
Length=879

 Score =  815 bits (441),  Expect = 0.0
 Identities = 483/504 (96%), Gaps = 0/504 (0%)
 Strand=Plus/Plus

Query  15   AGCTTCAATGGAGTTAGCTTCTTTTCTTGGTAGAGCTCTGTTTGTTTCCGTCTTTCTTCT  74
            |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct  171  AGCTTCAATGGAGTTAGCTTCTTTCCTTGGTAGAGCTCTGTTTGTTTCCGTATTTCTTCT  230

Query  75   CTCCGCATGGCAAGAGTTTAATGATTTTGGTGAGGATGGTGGCCGATCAGCTAAATCTTT  134
            |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct  231  CTCCGCATGGCAAGAGTTCAATGATTTTGGTGAAGATGGTGGCCGATCAGCTAAATCTTT  290

Query  135  GAAACCAAAATTCAATGCCTTTGTAAACCATGTGACAACTCATACTGGCCAGCAATTGCC  194
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  291  GAAACCAAAATTCAATGCCTTTGTAAACCATGTGACAACTCACACTGGCCAGCAATTGCC  350

Query  195  CCCAGTCGATATGAAGATTCTCGTTGCTGCTGCCATAGCCTTGAAGGGTATTGGGGGACT  254
             |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct  351  ACCAGTCGATATGAAGATTCTTGTTGCTGCTGCTATAGCCTTGAAGGGTATTGGGGGACT  410

Query  255  GTTGTTTGTCTTTGGCAGCTCCTTGGGAGCTTATCTCTTGCTTCTGCATCAAGCCATTGC  314
             |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct  411  ATTGTTTGTCTTTGGCAGCTCATTGGGAGCTTATCTCTTGCTTCTGCATCAAGCCGTTGC  470

Query  315  CACCCCAATTCTGTATGATTTCTACAACTATGATGTTGACAGAAAGGAATTTGGCCAACT  374
            |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct  471  CACCCCAATTCTGTATGATTTCTACAACTACGATGTTGACAGAAAGGAATTCGGCCAACT  530

Query  375  ATTTTCAAAATTTACTCAGAGCATGGCTCTCCTTGGAGCACTGCTCTTCTTCATTGGAAT  434
            ||||||||||||||| |||||| ||||||| ||||||| |||||||||||||||||||||
Sbjct  531  ATTTTCAAAATTTACACAGAGCTTGGCTCTTCTTGGAGGACTGCTCTTCTTCATTGGAAT  590

Query  435  GAAGAACTCAAGGAAACACGGTAGGCAACTCAGGAAAAAGGCTCCAAAGGCAAAAACAAA  494
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  591  GAAAAACTCAAGGAAACACGGTAGGCAACTCAGGAAAAAGGCTCCAAAGGCAAAAGCAAA  650

Query  495  CTGAAAAAGCCACATCTTTCATCG  518
            ||||| |||||| |||||||||||
Sbjct  651  CTGAAGAAGCCATATCTTTCATCG  674



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24765434471


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5