BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946947
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14390.1 | Symbols: | Ankyrin repeat family protein | chr4:... 966 0.0
AT4G14400.1 | Symbols: ACD6 | ankyrin repeat family protein | c... 715 0.0
AT4G05040.1 | Symbols: | ankyrin repeat family protein | chr4:... 689 0.0
> AT4G14390.1 | Symbols: | Ankyrin repeat family protein | chr4:8289644-8292083
FORWARD LENGTH=2085
Length=2085
Score = 966 bits (523), Expect = 0.0
Identities = 743/848 (88%), Gaps = 20/848 (2%)
Strand=Plus/Plus
Query 44 GAGCTAGATAGAATTGAGGCACAAAGGTCAACGGATGCGTCTCATGATCAACGGAA-AGG 102
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | |
Sbjct 76 GAGCTAGATAGAATTGAGGCACAAAGGTCAACAGATGCGTCTCATGATCAACAGAACA-G 134
Query 103 AACATACTTACCCATGAACATACATGGTTCACAAGATTTCTCTCAAAGCGGAGGAGATGG 162
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 135 AACATACTTACCCATGAACATACACGGTTCACAAGACTTCTCTCAAAGCGGAGGAGATGG 194
Query 163 CGCCACGTCACCTACGGGAGACACCGAATCTATGCCAGAGTTCCTAACTAACCTCAGATT 222
|| |||| ||| ||| ||||||||||||||| ||||||||||||| |||||||| |||||
Sbjct 195 CGTCACGCCACTTACAGGAGACACCGAATCTGTGCCAGAGTTCCTTACTAACCTTAGATT 254
Query 223 GTCGGATCTTTTCGCTATTCGTGGTAAAGATTTCCCGATGCCTCCATG-GATTTTTAGTA 281
||||||||||| |||||| |||||| ||||| ||| |||| |||| | | |||||||||
Sbjct 255 GTCGGATCTTTACGCTATCCGTGGTGAAGATGTCCGGATGATTCCA-GAGGTTTTTAGTA 313
Query 282 AAATAAGTGATGGGAACAAACAATGTCTGGAGAAGTTGAAAAGCCACAGAAATTT-AATG 340
|||||||||||||||||||| |||||||||||||||||| ||||| | ||||| | ||
Sbjct 314 AAATAAGTGATGGGAACAAAGAATGTCTGGAGAAGTTGAGAAGCC-GTGGAATTTCAGTG 372
Query 341 GCACGTCTCAAGAGCAATACAGGAGATTCAATTCTTCATCTTGCTGCTAGATGGGGTCAT 400
|||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 373 GCACGTATCAAGAGCAATACAGGAGATTCAATTCTTCATCTTGCTGTTACATGGGGTCAT 432
Query 401 CTAGAACTAGTGAAGAACATTGCCTGTGAATGTCCGTGCCTTCTATTGGAGCCAAACTCG 460
||||||||||||||| | |||| ||||||||| ||| | ||||| ||||||| ||||||
Sbjct 433 CTAGAACTAGTGAAGGAGATTGTCTGTGAATGCCCGCGTCTTCTCTTGGAGCAAAACTCA 492
Query 461 AGCGGTCAGACACCGCTTCATGTGGCGGCTCATGGCGGTCATACCGCTATTGTTGAGGCT 520
||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 493 AGCGGTCAGACACCGCTACATGTGGCGGCTCATAGCGGTCATACCACTATTGTTGAGGCT 552
Query 521 TTTGTTGCATTGGTAACATTTGCCTCATCTAGATTGTGTAATGAAGAGAGTGAGAGAGTG 580
||||| ||||||||||||||| | ||| ||||| ||||||||||||||||||||||| ||
Sbjct 553 TTTGTCGCATTGGTAACATTTTCTTCAGCTAGACTGTGTAATGAAGAGAGTGAGAGAATG 612
Query 581 AATCCATATGTTCTCAAGGACGAGGATGGAAATACTGCTCTGCACTTGGCCATTAAAGGA 640
|| |||||||||||||||||| | |||||||||||||||||| ||| || ||| ||||
Sbjct 613 AACCCATATGTTCTCAAGGACAAAGATGGAAATACTGCTCTGTACTACGCGATTGAAGGG 672
Query 641 CTCTATTTGGAGATCGCTAG-ATGTCTGGTGAACGCGAACCAGGATGCTCCTTTTCTTGG 699
| |||||| ||||| ||| | ||||||||||||||| |||||||||||||||||||||||
Sbjct 673 CGCTATTTCGAGATGGCT-GTATGTCTGGTGAACGCAAACCAGGATGCTCCTTTTCTTGG 731
Query 700 AAATAACAAGGGAATATCTTCCTTGTATATGGCAGTAGA-AGCTAGA-ATGGTAACCCTT 757
|||||| | ||| |||||||||||| | ||||| || | | || || ||| || | |||
Sbjct 732 AAATAAGTATGGAGTATCTTCCTTGTTTGTGGCAATAAATA-CTGGAGATG-TATCTCTT 789
Query 758 GTGGAAGCAATTTTGAAAACTAA-AGACGATGACGATGAGGACCTTGAAGGGAAGAAGTC 816
||| ||||||||||||||| | | || | | || | |||||||| |||||||||||||
Sbjct 790 GTGAAAGCAATTTTGAAAA-TCATAGGC-A--AC-A--AGGACCTTAAAGGGAAGAAGTC 842
Query 817 TAACTTAGAGTCGAAGATACAAGGGTACAAATTTCTTGTACATGTTGCTTTGCAGGCCAA 876
|||||| ||||| ||| |||||||| | |||| ||||| ||||||||||||| | || |
Sbjct 843 TAACTTGGAGTCAAAGTTACAAGGGCAGAAATCTCTTGCACATGTTGCTTTGGTGACCCA 902
Query 877 GAGTATAG 884
||||||||
Sbjct 903 GAGTATAG 910
> AT4G14400.1 | Symbols: ACD6 | ankyrin repeat family protein |
chr4:8294446-8298602 FORWARD LENGTH=2354
Length=2354
Score = 715 bits (387), Expect = 0.0
Identities = 643/765 (84%), Gaps = 23/765 (3%)
Strand=Plus/Plus
Query 135 AAGATTTCTCTCAAAGCGGAGGAGATGGCGCCACGTCACCTACGGGAGACACCGAATCTA 194
||||||||||||| |||||||||| |||| |||||||||||||||| ||||||||| ||
Sbjct 173 AAGATTTCTCTCACAGCGGAGGAGTTGGCACCACGTCACCTACGGGCGACACCGAACCTG 232
Query 195 TGCCAGAGTTCC-TAACTAACCTCAGATTGTCGGATCTTTTCGCTATTCGTGGTAAAGAT 253
||||| |||||| | |||||||| | ||||||||||||||||||| | | |||| |||||
Sbjct 233 TGCCAAAGTTCCGT-ACTAACCTTAAATTGTCGGATCTTTTCGCTCTCCCTGGTGAAGAT 291
Query 254 TTCCCGATGCCTCCATG-GATTTTTAGTAAAATAAGTGAT-GGGAACAAACAATGTCTGG 311
|| |||| |||| | ||||||| || ||| ||| || ||||| ||| |||||||||
Sbjct 292 GTCGAGATGACTCC-GGAGATTTTTGGTGGAATGAGTAATGGGGAA-AAAGAATGTCTGG 349
Query 312 AGAAGTTGAAAAGCCACAGAAATTTAATGGCACGTCTCAAGAGCAATACAGGAGATTCAA 371
||||||||| |||| | ||| ||||| |||| ||||||||||||||||||||||||
Sbjct 350 AGAAGTTGAGAAGCAATGGAACGCCAATGGAACGTGTCAAGAGCAATACAGGAGATTCAA 409
Query 372 TTCTTCATCTTGCTGCTAGATGGGGTCATCTAGAACTAGTGAAGAACATTGCCTGTGAAT 431
|||||||| ||||||||| |||||||||||| |||||||||||| | ||| || |||||
Sbjct 410 TTCTTCATATTGCTGCTAAATGGGGTCATCTGGAACTAGTGAAGGAGATTATCTTTGAAT 469
Query 432 GTCCGTGCCTTCTATTGGAGCCAAACTCGAGCGGTCAGACACCGCTTCATGTGGCGGCTC 491
|||| ||||||||||| |||| |||||| ||| ||||||||||||| |||||||| |||
Sbjct 470 GTCCATGCCTTCTATTCGAGCAAAACTCAAGCCGTCAGACACCGCTACATGTGGCTACTC 529
Query 492 ATGGCGGTCATACCGCTA-TTGTTGAGGCTTTTGTTGCATTGGTAACATTTGCCTCATCT 550
|||||||||||||| | ||||||||||| ||||||||| |||||||| ||| | | ||
Sbjct 530 ATGGCGGTCATACC-AAAGTTGTTGAGGCTCTTGTTGCATCGGTAACATCTGCTTTAGCT 588
Query 551 AGAT-TGTGTAATGAAGAGAGTGAGAGAGTGAATCCATATGTTCTCAAGGACGAGGATGG 609
|| | || ||| ||||||||||||| || |||||||| ||||||| |||||||| |||||
Sbjct 589 AG-TCTGAGTACTGAAGAGAGTGAGGGACTGAATCCACATGTTCTTAAGGACGAAGATGG 647
Query 610 AAATACTGCTCTGCACTTGGCCATTAAAGGACTCTATTTGGAGATCGCTAGATGTCTGGT 669
||||||||||||| ||| |||||| |||||| |||||||||||| |||| ||||||||
Sbjct 648 AAATACTGCTCTGTACTACGCCATTGAAGGACGCTATTTGGAGATGGCTACCTGTCTGGT 707
Query 670 GAACGCGAACCAGGATGCTCCTTTTCTTGGAAATAACAAGGGAATATCTTCCTTGTAT-A 728
||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 708 GAACGCGGACAAGGATGCTCCTTTTCTTGGAAATAACAAGGGAATATCTTCCTTGTACGA 767
Query 729 TGGCAGTAGAAGCTAGAA-TGG-T---AAC-CCTTGTGGAAGCAATTTTGAAAACTAAAG 782
| | ||||| ||| ||| | | || ||||||| |||||||||||||||| | ||
Sbjct 768 AGCC-GTAGACGCTGGAAATAAATTTGAAGACCTTGTGAAAGCAATTTTGAAAACCACAG 826
Query 783 ACGATGACGATGAGGACCTTGAAGGGAAGAAGTCTAACTTAGAGTCGAAGAT-ACAAGGG 841
|||| ||| || | ||| ||||| || ||||| ||||||||| ||||| || |||||||
Sbjct 827 ACGACAACG-TG-G-ACCGTGAAGTGAGGAAGTTTAACTTAGATTCGAA-ATTACAAGGG 882
Query 842 TACAAATTTCTTGTACATGTTGCTTTGCAGGCCAAGAGTATAGGT 886
||||| ||||| ||||||||||||| ||||||| |||||||||
Sbjct 883 AACAAACATCTTGCACATGTTGCTTTGAAGGCCAAAAGTATAGGT 927
Score = 111 bits (60), Expect = 9e-24
Identities = 77/85 (91%), Gaps = 2/85 (2%)
Strand=Plus/Plus
Query 18 GGTTTGCGATGGACAGTTCTGAAGCAGAGCTAGATAGAATTGAGGCACAAAGGTCAACGG 77
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
Sbjct 92 GGTTTGCGATGGACAGTTCTGGAGCAGATCTAGATAGAATTGAGGCACAAAGGTCAATGT 151
Query 78 -ATGCGTCTCATGATCAACGGAAAG 101
| | |||||||||||||||||||
Sbjct 152 TA-GTTTCTCATGATCAACGGAAAG 175
> AT4G05040.1 | Symbols: | ankyrin repeat family protein | chr4:2578689-2581798
FORWARD LENGTH=2375
Length=2375
Score = 689 bits (373), Expect = 0.0
Identities = 740/911 (81%), Gaps = 50/911 (5%)
Strand=Plus/Plus
Query 1 TTTGTGTGATGATTTTAGGTTTGCGATGGACAGTTCTGAAGCAGAGCTAGATAGAATTGA 60
||||||||||||||||||| ||| ||||||||||||||||||| | ||||||||||||||
Sbjct 608 TTTGTGTGATGATTTTAGGATTGTGATGGACAGTTCTGAAGCACATCTAGATAGAATTGA 667
Query 61 GGCACAAAGGTCAACGGATGCGTCTCATGATCAACGGAAAGGAACATACTTACCC-ATGA 119
|||||| ||||||||||||| ||||||||| |||| |||| || |||||| ||| ||||
Sbjct 668 GGCACAGAGGTCAACGGATGTGTCTCATGACCAACAGAAAAAAAGATACTT-CCCAATGA 726
Query 120 A-C--AT--ACATGGTTCACAAG--ATTTCT-CTCAAAGCGGAGGAGATGGCGCCACGTC 171
| | || ||| | || |||| | ||| || | | |||||||||||||||||| |
Sbjct 727 ATCTGATAAACAAAG-TCGCAAGCAAACTCTGTTC-ACGAGGAGGAGATGGCGCCACGCC 784
Query 172 ACCTACGGGAGACACCGAATCTATGCCAGAGTTCCT-AACTAACCTCAGATTGTCGGATC 230
||||| |||||||| |||||| || ||||||||| ||| ||||||| ||| |||||||
Sbjct 785 ACCTATGGGAGACAATGAATCTGGGCTAGAGTTCCTCAAC-AACCTCAAATTATCGGATC 843
Query 231 TTTTCGCTAT-T--CGTGGT-AAAGATTTCCCGATGCCTCCATGG-A-TTTTTAGTAAAA 284
||||| | || | || ||| ||| || ||| |||| | | || | ||||||| |
Sbjct 844 TTTTC-C-ATCTCCCG-GGTGAAA-ATGTCCAGATGAAT--ACGGAAGTTTTTAGCGGAC 897
Query 285 TAAGTGATGGGAACAAACAATGTCTGGAGAAGTTGAAAAGCCACAGAAATTTAATGGCAC 344
| ||||||||| ||||| | |||||||||| ||||||| || ||| |||||||
Sbjct 898 TGAGTGATGGGGACAAAGAGTGTCTGGAGATGTTGAAAGGCGTTGGAACGCCAATGGCAT 957
Query 345 GTCTCAAGAGCAATACAGGAGATTCAATTCTTCATCTTGCTGCTAGATGGGGTCATCTAG 404
||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 958 GTCTCAAGAGCGATAGAGGAGATTCAGTTCTTCATCTTGCTGCTAGATGGGGTCATCTAG 1017
Query 405 AACTAGTGAAGAACATTGCCTGTGAATGTCCGTGCCTTCTATTGGAGCCAAACT-CGAGC 463
||||||||||||||||| || |||||| || |||||| |||||||| ||||| | ||
Sbjct 1018 AACTAGTGAAGAACATTATCTCTGAATGCCCATGCCTTGTATTGGAGTTAAACTTCAAG- 1076
Query 464 GGTCAGACA-CCGCTTCATGTGGCGGCTCATGGCGGTCATACCGCTATTGTTGAGGCTTT 522
| |||| | |||||||||||||| ||||||| ||||||| | ||||||||||||||| |
Sbjct 1077 GATCAG-CTTCCGCTTCATGTGGCAGCTCATGCCGGTCATTCGGCTATTGTTGAGGCTCT 1135
Query 523 TGTTGCATTGGTAACATTTGCCTCATCTAGATTG--TGTAATGAAGAGAGTGAGAGAGTG 580
|||||| | |||||||||| ||| |||| || || || ||||| || |||||| |
Sbjct 1136 TGTTGCGTCGGTAACATTTTTTTCAGATAGACTGGCTG-AA-GAAGATAGAGAGAGACTA 1193
Query 581 AATCCATATGTTCTCA-AGGACGAGGATGGAAATACTGCTCTGCACTTGGCCATTAAAGG 639
|||||||||||||||| || || | ||||||||||||||||||||||||||||| ||||
Sbjct 1194 AATCCATATGTTCTCAGAG-ACAAATATGGAAATACTGCTCTGCACTTGGCCATTGAAGG 1252
Query 640 ACTCTATTTGGAGATCGCTAGA-TGTCTGGTGAACGCGAACCAGGATGCTCCTTTTCTTG 698
|| |||| ||||||| ||| | | ||||||||||| ||||||| ||||| |||||||||
Sbjct 1253 ACGCTATATGGAGATGGCT-GCCTCTCTGGTGAACGAGAACCAGAATGCTTCTTTTCTTG 1311
Query 699 GAAATAACAAGGGAATATCTTCCTTGTATATGGCAGTAGAAGCTAGA-ATGGTAACCCTT 757
|||||| ||||||||||||||||||| ||||||||||||||| || ||| | || |||
Sbjct 1312 AAAATAATGAGGGAATATCTTCCTTGTACATGGCAGTAGAAGCTGGAGATG-TGACTCTT 1370
Query 758 GTGGAAGCAATTTTGAAAACTAAAGACGATGACGATGAGGACCTTGAAGGGAAGAAGTCT 817
||| ||| |||||||||||| || | | || |||| ||||||||||| ||| |||
Sbjct 1371 GTGAAAGAAATTTTGAAAACCGCAG--G-TAACAATGA---CCTTGAAGGGAGGAACTCT 1424
Query 818 AACTTAGAGTCGAAGATACAAGGGTACAAATT-TCTTGTACATGTTGCTTTGCAGGCCAA 876
|||||||| || ||| | ||||| | ||| ||||||||||||||||||| | ||||
Sbjct 1425 AACTTAGATTCAAAGTTGGAAGGG-AGAAAACATCTTGTACATGTTGCTTTGAATGCCA- 1482
Query 877 GA-GTATAGGT 886
|| ||||||||
Sbjct 1483 GAAGTATAGGT 1493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46064712799
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5