BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946948
Length=529
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14385.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 857 0.0
> AT4G14385.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING:
15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H4 acetyltransferase,
NuA4 complex, Eaf6 (InterPro:IPR015418); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:8286986-8288800 REVERSE LENGTH=828
Length=828
Score = 857 bits (464), Expect = 0.0
Identities = 504/523 (96%), Gaps = 3/523 (1%)
Strand=Plus/Plus
Query 10 TTTCACGGAAAATGTCTTTAGGGCAAAAGAGTTCGACGGATCCTGGTGCGATGCTCACTT 69
|||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 TTTCTCAGAAAATGTCGTTAGGGCAAAAGAGTTCGACGGATCCTGGTGCGATGCTCACTT 227
Query 70 CTCTTTTGAACAAGCGAGAGAAGCTTCGTCAAGAGTTACGAAGCATCGAGAAACAGGTTT 129
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 228 CTCTTCTGAACAAGCGAGAGAAGCTTCGCCAAGAGTTACGAAGCATCGAGAAACAGGTTT 287
Query 130 ATGAATTGGAGACAAGCTATCTTCAAGAATCGAGTCATATTGGAAATGCTTTGAAAGGTT 189
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 288 ATGAATTGGAGACAAGCTATCTTCAAGAATCGAGTCATATTGGAAATGCTTTGAAAGGCT 347
Query 190 TTGAAGGGTTTTTGTCTTCCTCCAAGAGTACTGCTAGTGCTAAGAGGTCGAGGAAGTTTC 249
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 348 TTGAAGGGTTTTTGTCTTCCTCCAAGAGTACTGCTAGTGCTAAAAGGTCAAGGAAGTTTC 407
Query 250 AGCCTGAAGACAGAGTCTTTTCATTGTCCTCAGTTACATCACCTGCTGCTGAAGAACTTG 309
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 408 AGCCTGAAGACAGAGTCTTCTCATTGTCCTCAGTTACATCACCAGCTGCTGAAGAACTTG 467
Query 310 GTGTTGGAAGAGAAGATGGACGAGCTGAATTAGGGCCAGGGCGATCTAAGGGTGGTTTGT 369
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 468 GTGTTGGAAGAGAAGATGGACGAGCTGAATTAGGGCCAGGGCGATCCAAGGGTGGTTTGT 527
Query 370 CGACACAGGGAAAGCCAAAGAAAGGGAGAGGACAATCAATA---GCAAGAGAGGCAAAGA 426
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 528 CGACACAGGGAAAGCCGAAGAAAGGGAGAGGACAATCAATAATAGCAAGAGAGGCAAAGA 587
Query 427 GAAGCAGACCATCAACAGAACCAGATTATGAAGATGAAGATGATCCGGATATGAATATGT 486
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 588 GAAGCAGACCATCTACAGAACCAGATTATGAAGATGAAGATGATCCTGATATGAATATGT 647
Query 487 ATGGGCATGGTTCACTCATCTAAGGCGTTTTCTGTTTTGGTGC 529
|||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 648 ATGGCCATGGTTCACTCATCTAAGGCATTTTCTGTTTTGGTGC 690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25318010088
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5