BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946957
Length=1411
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14340.1 | Symbols: CKI1, CKL11 | casein kinase I | chr4:824... 2364 0.0
> AT4G14340.1 | Symbols: CKI1, CKL11 | casein kinase I | chr4:8248286-8251998
REVERSE LENGTH=1950
Length=1950
Score = 2364 bits (1280), Expect = 0.0
Identities = 1369/1412 (97%), Gaps = 5/1412 (0%)
Strand=Plus/Plus
Query 1 TCATCGGAATTCGAAAAAAGATGGATCGGATTCAAAAGATGGATCACGTCATCGGTGGGA 60
||||||||||||| |||||||||||||||| |||||||||||||||||| ||||| ||||
Sbjct 311 TCATCGGAATTCGGAAAAAGATGGATCGGAATCAAAAGATGGATCACGTTATCGGCGGGA 370
Query 61 AGTTTAAGTTGGGTAGGAAGCTTGGAAGTGGATCATTCGGTGAACTTTATTTAGGGATCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AGTTTAAGTTGGGTAGGAAGCTTGGAAGTGGATCATTCGGTGAACTTTATTTAGGGATCA 430
Query 121 ATATTCAAACTGGAGAAGAAGTAGCAGTTAAGCTGGAACCTGTGAAGACGAGGCATCCTC 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 431 ATATTCAAACTGGAGAAGAAGTCGCAGTTAAGCTGGAACCTGTGAAGACGAGGCATCCTC 490
Query 181 AACTGCAGTATGAATCGAAAATATATATGTTTCTTCAAGGAGGAACGGGTGTACCCCATC 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 491 AACTGCAGTATGAATCGAAAATATATATGTTTCTTCAAGGAGGAACGGGTGTTCCCCATC 550
Query 241 TGAAATGGTTCGGAGTTGAGGGTGAATACAGTTGCATGGTTATCGATCTTCTTGGGCCCA 300
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 551 TGAAATGGTTTGGAGTTGAGGGTGAATACAGTTGCATGGTTATCGATCTTCTTGGGCCAA 610
Query 301 GCTTGGAGGACTTATTCAATTACTGCAAGCGAATATTTTCATTAAAATCTGTTTTAATGC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 GCTTGGAGGACTTATTCAATTACTGCAAGCGAATATTTTCATTAAAATCTGTTTTAATGC 670
Query 361 TTGCAGATCAATTGATATGTAGAGTTGAGTACATGCATTCGCGGGGTTTTCTTCACCGCG 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 671 TTGCAGATCAATTGATATGTAGAGTTGAGTATATGCATTCGCGGGGTTTTCTTCACCGCG 730
Query 421 ATATTAAACCAGACAACTTTTTGATGGGTCTTGGGCGCAGAGCAAACCAGGTGTATATCA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 ATATTAAACCAGACAACTTTTTGATGGGTCTTGGGCGCAGAGCAAACCAGGTGTATATCA 790
Query 481 TTGATTATGGCCTTGCTAAAAAATACAAGGATCTTCAGACACAAAAGCATATACCATACA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 TTGATTATGGCCTTGCTAAAAAATACAAGGATCTTCAGACACAAAAGCATATACCATACA 850
Query 541 GGGAAAACAAGAATCTTACAGGTACTGCTCGGTATGCAAGTGTGAACACACACCTTGGGA 600
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 851 GGGAAAACAAGAATCTTACAGGAACTGCTCGGTATGCAAGTGTGAACACACACCTTGGGA 910
Query 601 TTGAGCAAAGTAGAAGAGATGATCTGGAGTCACTTGGTTATGTGTTGATGTATTTTCTAC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 TTGAGCAAAGTAGAAGAGATGATCTGGAGTCACTTGGTTATGTGTTGATGTATTTTCTAC 970
Query 661 GAGGAAGTCTTCCGTGGCAAGGTTTAAAAGCTGGTACGAAGAAGCAGAAGTATGACAAGA 720
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 971 GAGGAAGTCTTCCGTGGCAAGGTTTAAAAGCTGGTACGAAGAAGCAGAAATATGACAAGA 1030
Query 721 TTAGTGAAAAGAAGATGCTTACTTCTGTAGAGACTCTTTGCAAGTCGTATCCATCAGAGT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 TTAGTGAAAAGAAGATGCTTACTTCTGTAGAGACTCTTTGCAAGTCGTATCCATCAGAGT 1090
Query 781 TTACCTCGTACTTCCATTACTGTCGATCATTGAGATTTGAGGACAAACCAGATTATTCGT 840
| || |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 1091 TCACATCGTACTTCCATTACTGTCGTTCATTGAGATTTGAGGACAAACCGGATTATTCAT 1150
Query 841 ATCTGAGAAGACTTTTTAGGGACCTTTTCATTCGTGAAGGTTATCAGCTCGATTACGTGT 900
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 1151 ATCTGAGAAGACTTTTTAGGGATCTTTTCATTCGTGAAGGTTATCAGCTTGATTATGTGT 1210
Query 901 TTGATTGGACAATCTCGAAGTATCCTCAGATTGGTTCTAGTTCGAGACCAAGGCCAACTA 960
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1211 TTGATTGGACAATCTCGAAGTATCCTCAGATTGGCTCTAGTTCGAGACCAAGGCCAACTC 1270
Query 961 CAAGACCAGCCTTGGACCCTCCAGGACCACCTGCAGAAAGAGCTGAAAAGCCTACAGTAG 1020
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1271 CAAGACCAGCGTTGGACCCTCCAGGACCACCTGCAGAAAGAGCTGAAAAGCCTACAGTCG 1330
Query 1021 GACAGGACCTGCGAGGAAGATTTACAGGCGCCATTGAGGCATTTACCAGACGAAATGTTT 1080
|||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 1331 GACAGGACCTGCGAGGAAGATTTACAGGTGCAATTGAGGCATTCACCAGACGAAATGTTT 1390
Query 1081 CAAGCCAAGGCGCTCATGGTGACCGCTCGAGACACAGATCTTCGGATGATATACCCTCTT 1140
||||||||||||||| |||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 1391 CAAGCCAAGGCGCTCTTGGTGATCGCTCTAGACACAGATCTTCTGATGATATACCCTCTT 1450
Query 1141 CTGCCAAGGAAGTGCACGAGTCTCGAAATGGAAGTACCTCAAAGAGAGGTGTGATATCAA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1451 CTGCCAAGGAAGTGCACGAGTCTCGAAATGGAAGTACCTCAAAGAGAGGTGTGATATCAA 1510
Query 1201 GCAGCAGACCTGGCTCATCAGCTGAGCCAAGCGAGAACCGTTCAAGCCGACTATTTTCAA 1260
||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1511 GCACCAGACCTGGCTCATCAGCTGAACCAAGCGAGAACCACTCAAGCCGACTATTTTCAA 1570
Query 1261 GTGGATCACGTCATGCCACAACCCAAAGGGTTCCACAGAGCTATGAATCTGCAGCTGCA- 1319
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1571 GTGGTTCACGTCATGCCACAACCCAACGGGTTCCACAGAGCTATGAATCTGCAGCTGCAG 1630
Query 1320 -A-GGCCTGGGCATGAGGATGCCATTAGAAGCTTCGAGCTCCTTACCATTGGCTCTGGGA 1377
| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
Sbjct 1631 CAAGGCCTGGGCATGAGGATGCCATTAGAAACTTCGAGCTCCTTACCATCGGCTCTGG-A 1689
Query 1378 AA-AAGAGGAAATGAAGATAGGGAAGGAGAAG 1408
|| |||||||||||||||||||||||||||||
Sbjct 1690 AAGAAGAGGAAATGAAGATAGGGAAGGAGAAG 1721
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69527754825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5