BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946959
Length=365
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14320.2 | Symbols: | Zinc-binding ribosomal protein family... 449 7e-126
AT3G23390.1 | Symbols: | Zinc-binding ribosomal protein family... 429 8e-120
> AT4G14320.2 | Symbols: | Zinc-binding ribosomal protein family
protein | chr4:8241732-8243910 REVERSE LENGTH=679
Length=679
Score = 449 bits (243), Expect = 7e-126
Identities = 282/301 (94%), Gaps = 2/301 (1%)
Strand=Plus/Plus
Query 3 AGCTTCTCCGAAGAGCGAAAATGGTGAACATTCCTAAAACCAAGAACACTTACTGCAAGA 62
|||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 86 AGCTTCACCGAAGAGCGAAAATGGTGAACATTCCGAAAACTAAGAACACTTACTGCAAGA 145
Query 63 ACAAGGAATGCAAGAAGCACACCTTGCACAAGGTTACTCAGTACAA-AAAGGGTAAAGAC 121
||||||| ||||||||||| |||||||||||||| || ||||| || ||| ||||||||
Sbjct 146 ACAAGGAGTGCAAGAAGCATACCTTGCACAAGGTGACGCAGTATAAGAAA-GGTAAAGAT 204
Query 122 AGTCTTGCTGCCCAAGGAAAGCGTCGTTATGACCGTAAACAATCTGGTTATGGAGGTCAG 181
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 205 AGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAG 264
Query 182 ACCAAGCCCGTCTTCCACAAGAAGGCTAAGACAACCAAGAAGATTGTCCTGAGGCTTCAG 241
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 265 ACCAAGCCCGTCTTCCACAAGAAGGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAA 324
Query 242 TGCCAAAGCTGCAAACATTTCTCTCAACGCCCGATTAAAAGGTGCAAGCACTTTGAGATC 301
|||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 325 TGCCAAAGCTGCAAGCATTTCTCGCAACGCCCGATTAAGAGGTGCAAGCACTTTGAGATC 384
Query 302 G 302
|
Sbjct 385 G 385
> AT3G23390.1 | Symbols: | Zinc-binding ribosomal protein family
protein | chr3:8375372-8376392 FORWARD LENGTH=541
Length=541
Score = 429 bits (232), Expect = 8e-120
Identities = 308/344 (90%), Gaps = 8/344 (2%)
Strand=Plus/Plus
Query 14 AGA-GCGAAAATGGTGAACATTCCTAAA-ACCAAGAACACTTACTGCAAGAACAAGGAAT 71
||| |||||||||||||||||||| ||| || |||||||||||||| |||||||||||||
Sbjct 46 AGACGCGAAAATGGTGAACATTCC-AAAGACAAAGAACACTTACTGTAAGAACAAGGAAT 104
Query 72 GCAAGAAGCACACCTTGCACAAGGTTACTCAGTACAAAAAGGGTAAAGACAGTCTTGCTG 131
|||| ||||| || |||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 105 GCAAAAAGCATACTTTGCACAAGGTTACCCAATACAAGAAGGGTAAAGACAGTCTTGCTG 164
Query 132 CCCAAGGAAAGCGTCGTTATGACCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCG 191
| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 165 CTCAAGGAAAGCGTCGTTATGACCGTAAACAATCTGGTTATGGTGGTCAGACTAAGCCTG 224
Query 192 TCTTCCACAAGAAGGCTAAGACAACCAAGAAGATTGTCCTGAGGCTTCAGTGCCAAAGCT 251
|||||||||| ||||||||||| || ||||||||||| ||||||||||||| |||||||
Sbjct 225 TCTTCCACAAAAAGGCTAAGACCACGAAGAAGATTGTTTTGAGGCTTCAGTGTCAAAGCT 284
Query 252 GCAAACA-TTTCTCTCAACGCCCGATTAAAAGGTGCAAGCACTTT-GAGATCGGTGGAGA 309
|||| || ||| || || || || || || ||||||||||| ||| ||||||||||| ||
Sbjct 285 GCAAGCACTTT-TCGCAGCGTCCTATCAAGAGGTGCAAGCA-TTTCGAGATCGGTGGTGA 342
Query 310 CAAGAAAGGAAAGGGAACATCTCTCTTTTAAGTTG-TTTCATCT 352
|||||| ||||||||||||||||| |||||||||| ||||||||
Sbjct 343 CAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTTTCATCT 386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17141302409
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5