BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946967
Length=2148
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14280.1 | Symbols: | ARM repeat superfamily protein | chr4... 1790 0.0
> AT4G14280.1 | Symbols: | ARM repeat superfamily protein | chr4:8222518-8225185
FORWARD LENGTH=2508
Length=2508
Score = 1790 bits (969), Expect = 0.0
Identities = 1379/1570 (88%), Gaps = 56/1570 (4%)
Strand=Plus/Plus
Query 604 GGTGAAAAGATTCTTCTACGACGCCTACTCCAGATGTCTCCATGGGAACATCTTCGACGG 663
||||| |||||||||||| || |||||||| ||||| ||| | |||| ||||||||||||
Sbjct 843 GGTGAGAAGATTCTTCTATGATGCCTACTCAAGATGCCTCAACGGGAGCATCTTCGACGG 902
Query 664 CTTAAAGATTGG-TATGGCCAT-TTTCGCCATGGAGATTTTGGT-GTCGAATTCTCCTGA 720
|| |||| ||| ||||| || ||| ||||||||| | ||||| | ||||||||| |||
Sbjct 903 ATTGAAGA-TGGATATGGTGATCTTT-GCCATGGAGCTCTTGGTAG-CGAATTCTCTTGA 959
Query 721 TGAGCAACTCACTGGAGCAAACATTCTCTCTAGATTCTCGACCAACCAAGACTATTCTGT 780
|||||| |||| ||||||| | ||||| || | |||||| ||| || | |||||||| ||
Sbjct 960 TGAGCAGCTCATTGGAGCAGAGATTCTTTCGATATTCTCAACCCACGACGACTATTCGGT 1019
Query 781 TGATACTCTGCAGAAGATTGGAACGAATCTCG-AGATCGTAGAGCGGTTACTGGAGATGT 839
||||||| ||||||||||||| || ||||| | | ||| |||| ||||| |||||||||
Sbjct 1020 TGATACTTTGCAGAAGATTGGGACAAATCTTGCA-ATCATAGAAAGGTTAGTGGAGATGT 1078
Query 840 TGAATTGGAGAAACCAGAATCAACAAGTTGTGAGAAGGTCAGCTGCTGAGATTCTCTCAA 899
||||||||||| || | |||||| ||| |||||||| ||||||||| |||||||||||||
Sbjct 1079 TGAATTGGAGAGACAAAAATCAAGAAGATGTGAGAATGTCAGCTGCAGAGATTCTCTCAA 1138
Query 900 GATTAGCTAGTAAGAAGCAGAATTCTCTGAGAGTTGCGGGGATCCCTGGAGCGATTGAGT 959
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1139 GATTAGCTAGTAAGAAGCAGAACTCTCTGAGAGTTGCGGGGATCCCGGGAGCGATTGAGT 1198
Query 960 CCATATATTCTCTTTTACAGACCACAG-GAGATTCAGGTCAAG-C-C-------A-T-G- 1006
| |||| |||||||||| ||| ||| | ||||||||||| ||| | | | | |
Sbjct 1199 CGATATCTTCTCTTTTAGAGAGCAC-GAGAGATTCAGGTGAAGCCACTGATGAGATTGGA 1257
Query 1007 G-AC---G-AT----CAATCAAATTTATGGACGTTGATCAGTCTTGGACTGCTGATTCTG 1057
| || | || || |||||||||||||| |||| || |||||||||||||||||||
Sbjct 1258 GAACAGAGTATAAACCATTCAAATTTATGGACATTGAACAATCTTGGACTGCTGATTCTG 1317
Query 1058 AAAAGGCTAGCTCGAGATCATGATAACTGTGGCAAGATTGGGAAAACAAAAGGGTTACTT 1117
||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 1318 AAAAGGCTAGCTCGAGATCATGAGAACTGTGGAAAAATTGGGAAAACAAAAGGGTTACTT 1377
Query 1118 TCAAAGATCATTGACTTCACTTATGCTGATAAG-ATGCTGTTAGAGGAATCC----GTTG 1172
||||||||||||||||||||||||||||| ||| || |||| || ||||| ||||
Sbjct 1378 TCAAAGATCATTGACTTCACTTATGCTGAGAAGAAT-TTGTTGGA-AAATCCAAATGTTG 1435
Query 1173 C----G-AGA-CC-TATTCAGATCAT-GCTTGTGAAACGGTCTTTGAAGCTGTTAAAGAA 1224
| | ||| || || | ||||| | || ||||||||||||||||||||||||||||||
Sbjct 1436 CTGTTGCAGAGCCTTA-TAAGATCTTGGC-TGTGAAACGGTCTTTGAAGCTGTTAAAGAA 1493
Query 1225 CCTGGTGACCACGACTGGTGCAACGGGGAAGAACTTGAGGAGAGA-TATATCTGCCAATG 1283
||||||| |||||| || |||| |||||||||||||||| || ||| |||| | ||
Sbjct 1494 GCTGGTGAGCACGACAGGCACAACAGGGAAGAACTTGAGGA-TGACTATCTCTGGGATTG 1552
Query 1284 TCTTCACAGTGAGCAACATTAGGGAAACATTACACCATGGGAAGAGTCAACCTGATTTGC 1343
|||||||||||||||||||||||||||||||||| ||||| |||||||| ||| ||||||
Sbjct 1553 TCTTCACAGTGAGCAACATTAGGGAAACATTACATCATGGAAAGAGTCAGCCTCATTTGC 1612
Query 1344 AGAAGCTCGGTGCAGAGATCTTGACTTCCCTTGCATTTGACGAAGGTGCAGCCGAGAAAA 1403
||||||| ||||||||||| ||||||| |||||| ||||| ||||||||| |||||||||
Sbjct 1613 AGAAGCTTGGTGCAGAGATTTTGACTTTCCTTGCGTTTGAAGAAGGTGCAACCGAGAAAA 1672
Query 1404 TTGGGGGCACAGGCGGGGTTTTG-AAGGCACTTCTCTGCATATTCTTGAACAATGAGCTC 1462
| || ||||| |||||||||||| |||| ||||||||||||||||||||||||||| |
Sbjct 1673 TCGGAGGCACGGGCGGGGTTTTGAAAGG-GCTTCTCTGCATATTCTTGAACAATGAGATT 1731
Query 1463 CCAGTGGGTAAAAGTGGTGTGAGAGTCTCTGCTGGTGAATCTATAGCTATGCTAGCTCAA 1522
||| || ||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1732 CCAAAGGACAAAAGTGGTGTGAGAGTCTCTGCTGGTGAATCTGTTGCTATGCTAGCTCAA 1791
Query 1523 GGAAGTAAAAGCAATTGCCAACGGATCTTGAGATCAAATGTTCTTCAGAGACTCGTTGAG 1582
||||||||||||||||||||| ||| |||||| ||||||||||| || ||||||||||
Sbjct 1792 GGAAGTAAAAGCAATTGCCAAAAGATATTGAGAGCAAATGTTCTTAAGGGACTCGTTGAA 1851
Query 1583 GCGTTGGACAACCCATTGATTCGGTTGAATGCAGCGAGAATCTTGCGGAATCTCTGCGCA 1642
|||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 1852 GCGTTGGACAACCCGTTGATTCGGTTGAATGCAGCGAGGATCTTGCGTAATCTCTGTGCA 1911
Query 1643 TATACAGCTCCTGATCAGTTCAATGAAAAGCTGAAGGAAGTTATTAAATCTGCAGGAGCA 1702
||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1912 TATACAGCTCCTGGTCAGTTCAATGAACAGATGAAGGAAGTTATTAAATCTGCAGGAGCA 1971
Query 1703 ACAGTTCTTATGGCAATCAAGTATGAAGAG-GGAAAACCTCAAGAAGTTATGTTGGGATT 1761
|||||||||| |||||| |||| ||||||| || |||||||||||||||||| |||||||
Sbjct 1972 ACAGTTCTTAAGGCAATAAAGTCTGAAGAGAGG-AAACCTCAAGAAGTTATGGTGGGATT 2030
Query 1762 AGCACCGCATATTCTGAAGTTAATGAGTACTCCTGAAGAATTGAGAGGGATATTCGAGGA 1821
|||||| |||||||| |||||||||| |||||| ||||||||||||||||| ||||||||
Sbjct 2031 AGCACCACATATTCTCAAGTTAATGAATACTCCCGAAGAATTGAGAGGGATGTTCGAGGA 2090
Query 1822 AGCGGGAGTAACCGAGGAAGAACTAGCCAAGGCATTAACCAATATTCTCAAGAAATATGA 1881
||| |||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||
Sbjct 2091 AGCCGGAGTAACCGAGGAAGAACTAGCCAAGGCATTAATCAATATCCTCAAGAGATATGA 2150
Query 1882 ACAGCCAGTTCCAAAGGTTCCAAGAATCAGGAGGTTTGCAATAGAGCTAACCATTGCAAT 1941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2151 ACAGCCAGTTCCAAAGGTTCCAAGAATCAGGAGGTTTGCAATAGAGCTAACCATTGCGAT 2210
Query 1942 GATGAAAGCTAATCCT-GAGACGGTCAAGACTTTCCAAAACCTTGAAATGAAGAATGAAT 2000
|||||||||||| | | ||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 2211 GATGAAAGCTAA-CGTTGAGACTGTCAAGACCTTCCAAAACCTTGAGATGAAGAATGAAT 2269
Query 2001 TAGAGACCGTCTTTGAGACCGCGGCTGAGCTTGAGAACTTTGATATATTCTCTGGCACGG 2060
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2270 TAGAGACCGTCTTTGAGACCGCGGCTGAGCTTGAGAACTTTGATATATTTTCTGGCACGG 2329
Query 2061 TTGGTTTGGCAAGTCATGGCTCAACAATAAATGAACTCATTGAAGAAGCAATGCTGTTGT 2120
| ||||||||| | ||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 2330 TCGGTTTGGCACGCCATGGTTCAACTATCAATGAACTCATTGAAGAAGCAATGCTGTTGT 2389
Query 2121 TGAGTTAGAC 2130
|||| |||||
Sbjct 2390 TGAGGTAGAC 2399
Score = 339 bits (183), Expect = 9e-92
Identities = 289/338 (86%), Gaps = 15/338 (4%)
Strand=Plus/Plus
Query 72 GTTCTTCTGGCAGAACTA-TTTCCAGATCAGG-CGAGACTTCC-ACTCCAGAACCTCGGA 128
||||||| |||||||||| ||||| || | || |||||| ||| ||||||||||||||||
Sbjct 38 GTTCTTCCGGCAGAACTATTTTCC-GA-CCGGACGAGAC-TCCGACTCCAGAACCTCGGA 94
Query 129 GACTGATACAGTTG--G-TAGCCCCAGCGCCGGAGAAAAAACTGAATCTTTTTGCCTTAC 185
||| | ||| ||| | || || || |||||||||||||||| ||||||||||||
Sbjct 95 GACCAACACAATTGCCGCCAGTTCCTGCACCGGAGAAAAAACTGACCCTTTTTGCCTTAA 154
Query 186 GACTGGCTGTTCTTGAGAAGATTGCTACACGGTTGGGATCTTTAGGATTCGTGTGGGCTA 245
|||| ||||||||||||||||||||| || |||||||||||||||| ||||||||||| |
Sbjct 155 GACTCGCTGTTCTTGAGAAGATTGCTTCAGGGTTGGGATCTTTAGGTTTCGTGTGGGCCA 214
Query 246 CAGTTGTCCTTCTTGGTGGATTCGTTGGAAGTTTGGAGACATCAGATTTCTGGTTTGTTA 305
| ||||| |||||||||||||||| ||||||||| |||| | ||||||||||||||||||
Sbjct 215 CGGTTGTTCTTCTTGGTGGATTCGCTGGAAGTTTAGAGATAACAGATTTCTGGTTTGTTA 274
Query 306 CTGTGATTCTTGTTGTCGAAGGATCTCGGACTTT-CAGCAGAAGCCATGAGCTTGAACTG 364
|||||||||||||| | |||||| || || |||| ||| |||||||| ||||||||||||
Sbjct 275 CTGTGATTCTTGTTATTGAAGGAGCTAGG-CTTTTCAGTAGAAGCCACGAGCTTGAACTG 333
Query 365 CCA-CATTC-GTCTAAATACACAGTCTCTCGAATCAAC 400
| | ||| | |||||| |||||| ||||| ||||||||
Sbjct 334 C-AGCAT-CAGTCTAAGTACACAATCTCTGGAATCAAC 369
Score = 167 bits (90), Expect = 5e-40
Identities = 160/193 (83%), Gaps = 8/193 (4%)
Strand=Plus/Plus
Query 398 AACTTGAGCAGCGTCTTCTATTGGCTCCAGATTGCTTCTGCTTTCGCCAGCATTGTTACC 457
||| |||| || ||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 565 AACGTGAGTAGAATCTTCTATTGGCTCCAGATTGCTTCTGCTTTCGCCAGCATTTTTATC 624
Query 458 TCCATGTTC-AAGCTCATCAAGCAAGACTATAGAAGCAACGACTTGAAACCCA----C-C 511
|||| | || || |||||||| ||||||||| || |||||||||||||||||| | |
Sbjct 625 TCCACGATCCAA-CTCATCAAACAAGACTATGGAGGCAACGACTTGAAACCCAAAAGCAC 683
Query 512 -AATTTTTACTCTGCTTTGACTCTCTTCTACTCTATATCGCTTGCCGCGCCTCTTATCTT 570
||| || || | ||||||||||||||||||||| || | || |||| | ||||| | ||
Sbjct 684 CAATCTTCACGCAGCTTTGACTCTCTTCTACTCTCTAGCCCTAGCCGAGGCTCTTCTGTT 743
Query 571 TCTTGTCGAGAAA 583
||||| ||||||
Sbjct 744 CCTTGTTGAGAAA 756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106525556490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5