BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946972

Length=706
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G14260.1 | Symbols:  | Protein of unknown function (DUF295) ...   196    2e-49
  AT4G25920.1 | Symbols:  | Protein of unknown function (DUF295) ...   167    1e-40


> AT4G14260.1 | Symbols:  | Protein of unknown function (DUF295) 
| chr4:8216321-8217571 REVERSE LENGTH=1140
Length=1140

 Score =  196 bits (106),  Expect = 2e-49
 Identities = 195/233 (84%), Gaps = 25/233 (11%)
 Strand=Plus/Plus

Query  493  TCAACTCTA---AGGAGAAT-GACGAGCCCAAG-TCCATCGACTTGGAATT-TGACAAA-  545
            |||||||||   |||||||| | | | ||| || | ||||||||||| ||| ||| ||| 
Sbjct  644  TCAACTCTAGGCAGGAGAATGGGC-AACCC-AGCTTCATCGACTTGG-ATTATGA-AAAT  699

Query  546  CTTCCAAAGTCTGTGTTTCAGGAGTTGGC-GGACGTGAGTTCATGTTCCAGGACAGACCA  604
            |||||| |||| |||||| || ||||||| ||| |||||||||||||||| |||||| ||
Sbjct  700  CTTCCAGAGTCGGTGTTTAAGCAGTTGGCGGGA-GTGAGTTCATGTTCCAAGACAGATCA  758

Query  605  CCTTGTGGAGTCACCCACCGGCCAACTTTTCCTCGTCAAGTGGA-CGTGGAGGACCATGA  663
            |||||||||||||||||||||||||||||||||||||||||||  ||||||||||  || 
Sbjct  759  CCTTGTGGAGTCACCCACCGGCCAACTTTTCCTCGTCAAGTGGTTCGTGGAGGACG-TGG  817

Query  664  AG-AC----G--A---TACACTCATGCACGTAACAAAAAAGTTCATGGTGTTT  706
            || ||    |  |   ||||| |||||||||||||||||||||||||||||||
Sbjct  818  AGGACCTTTGCGACAATACACCCATGCACGTAACAAAAAAGTTCATGGTGTTT  870


> AT4G25920.1 | Symbols:  | Protein of unknown function (DUF295) 
| chr4:13165475-13166872 FORWARD LENGTH=1204
Length=1204

 Score =  167 bits (90),  Expect = 1e-40
 Identities = 155/185 (84%), Gaps = 10/185 (5%)
 Strand=Plus/Plus

Query  468  GGCAACTTCTTGTGCTACTTGGGT-CTCAACTCTAAGGAGAATGACGAGCCCAA--G--T  522
            |||||| |||||||||| |||| | ||| ||||  | ||| | ||||| || ||  |  |
Sbjct  634  GGCAACATCTTGTGCTATTTGGATCCTC-ACTC--A-GAGGACGACGA-CCTAATTGATT  688

Query  523  CCATCGACTTGGAATTTGACAAACTTCCAAAGTCTGTGTTTCAGGAGTTGGCGGACGTGA  582
             | | || ||||| |||||| | |||||||| || |||||||| |||||||| |||||||
Sbjct  689  TCGTGGAATTGGAGTTTGACGATCTTCCAAAATCGGTGTTTCAAGAGTTGGCCGACGTGA  748

Query  583  GTTCATGTTCCAGGACAGACCACCTTGTGGAGTCACCCACCGGCCAACTTTTCCTCGTCA  642
            || ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  749  GTACATGTTCTAGGACAGACCACCTTGTGGAGTCACCCACCGGCCAACTTTTCCTAGTCA  808

Query  643  AGTGG  647
            |||||
Sbjct  809  AGTGG  813



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34209454107


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5