BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946973

Length=672
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G25920.1 | Symbols:  | Protein of unknown function (DUF295) ...   167    1e-40
  AT4G14260.1 | Symbols:  | Protein of unknown function (DUF295) ...   154    1e-36


> AT4G25920.1 | Symbols:  | Protein of unknown function (DUF295) 
| chr4:13165475-13166872 FORWARD LENGTH=1204
Length=1204

 Score =  167 bits (90),  Expect = 1e-40
 Identities = 110/120 (92%), Gaps = 0/120 (0%)
 Strand=Plus/Plus

Query  495  TTGGAATTCGACAATCTTCCAAAGTCGGTGATTCATGAGTTGGCGGACGTGAGTTCATGT  554
            ||||| || ||| |||||||||| |||||| |||| |||||||| ||||||||| |||||
Sbjct  697  TTGGAGTTTGACGATCTTCCAAAATCGGTGTTTCAAGAGTTGGCCGACGTGAGTACATGT  756

Query  555  TCCAGGACAGACCACCTTGTGGAGTCACCCACCGGCCAACTTTTCCTTGTCAAGTGGTAT  614
            || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  757  TCTAGGACAGACCACCTTGTGGAGTCACCCACCGGCCAACTTTTCCTAGTCAAGTGGTAT  816


> AT4G14260.1 | Symbols:  | Protein of unknown function (DUF295) 
| chr4:8216321-8217571 REVERSE LENGTH=1140
Length=1140

 Score =  154 bits (83),  Expect = 1e-36
 Identities = 114/128 (89%), Gaps = 6/128 (5%)
 Strand=Plus/Plus

Query  488  CATCGACTTGGAATT-CGACAATCTTCCAAAGTCGGTGATTCATG-AGTTGGC-GGACGT  544
            ||||||||||| |||  || ||||||||| |||||||| || | | ||||||| ||| ||
Sbjct  678  CATCGACTTGG-ATTATGAAAATCTTCCAGAGTCGGTG-TTTAAGCAGTTGGCGGGA-GT  734

Query  545  GAGTTCATGTTCCAGGACAGACCACCTTGTGGAGTCACCCACCGGCCAACTTTTCCTTGT  604
            |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct  735  GAGTTCATGTTCCAAGACAGATCACCTTGTGGAGTCACCCACCGGCCAACTTTTCCTCGT  794

Query  605  CAAGTGGT  612
            ||||||||
Sbjct  795  CAAGTGGT  802



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32501493109


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5