BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946981

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G14225.1 | Symbols:  | A20/AN1-like zinc finger family prote...   263    1e-69


> AT4G14225.1 | Symbols:  | A20/AN1-like zinc finger family protein 
| chr4:8198777-8199202 FORWARD LENGTH=378
Length=378

 Score =  263 bits (142),  Expect = 1e-69
 Identities = 166/178 (93%), Gaps = 0/178 (0%)
 Strand=Plus/Plus

Query  266  TGCGTGCAAGAAGAAGGTTGGGTTGCTAGGGTTTCACTGTAGATGTGGCCACATGTTCTG  325
            |||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||| 
Sbjct  201  TGCGTGCAAGAAGAAGGTGGGGTTGCTAGGGTTTCACTGTAGATGTGGCCACTTATTCTT  260

Query  326  CGGGTCTCACCGCTACCCTGAAGAGCATTCTTGTCCATCGGATTATAAATCTGCAGCCAT  385
            || ||||||||| ||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct  261  CGCGTCTCACCGTTACCCGGAAGAGCATTCATGTCCATCGGATTATAAATCTGCCGCCAT  320

Query  386  TGACGTCTTAGCAAAACAAAACCCTATCGTCAAGGCTGATAAACTCTTCAGACTTTAG  443
            ||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||
Sbjct  321  TGACGTCTTAGCAAAACAAAACCCTGTCGTCAAGGGTGATAAGCTCTTCAGACTTTAG  378


 Score =  213 bits (115),  Expect = 1e-54
 Identities = 144/158 (91%), Gaps = 2/158 (1%)
 Strand=Plus/Plus

Query  21   ATGACAGGAGAACCATCTTTATGCATTAGAGGGTGTGGCTTCTTCAGCACGTCACAAACC  80
            ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| || 
Sbjct  1    ATGACGGGAGAACCTTCTTTATGCATTAGGGGGTGTGGCTTCTTCAGCACGTCACAGACG  60

Query  81   AAGAACCTCTGTTCTAAGTGCTACAACGATTTCTTAAAGGACGAGTCAGCCAGATACTTG  140
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  61   AAGAACCTCTGTTCTAAGTGCTACAACGATTTCTTAAAGGACGAGTCTGCCAGATACTTG  120

Query  141  GACACTTTCAACATCAACCCGGAAA-CAGCGGCAGAGG  177
            | |||||||||| ||||| || ||| | || | |||||
Sbjct  121  GCCACTTTCAACGTCAACACG-AAAGCCGCTGAAGAGG  157



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22067541811


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5