BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg946985 Length=2404 Score E Sequences producing significant alignments: (Bits) Value AT4G14200.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2671 0.0 > AT4G14200.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:8185370-8188783 REVERSE LENGTH=2625 Length=2625 Score = 2671 bits (1446), Expect = 0.0 Identities = 1750/1894 (92%), Gaps = 31/1894 (2%) Strand=Plus/Plus Query 521 AGTTGAAGCAGCTTCCGATG-ATCGACAAGGTGCAGAGTTTTCTACTGAAGGACACTCTA 579 ||||||| ||||||| || | |||||||||||||| || |||||||||||||||||||| Sbjct 620 AGTTGAATCAGCTTCAGA-GAATCGACAAGGTGCACAGCATTCTACTGAAGGACACTCTA 678 Query 580 TGGCATCTGAAACTGTGATTGAGTCATCATCACAGGAAGCTCAGGTCATTGACGGTGGTG 639 || |||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 679 TGTCATCTGAAACTGTGATTGAG---TCATCACAGGAAGCTCAGGTCATTGACGGTGGTG 735 Query 640 ATACCATATCAAATGATAGATTAGATACAGAATGCAAAGGCAAGTTAACGGAAGAATCTG 699 ||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||| Sbjct 736 ATACCATATCAAATGATAGATTAGAGACAGAATGCAAAGGGAAGTTAACGAAAGAATCTC 795 Query 700 AATCAAAGTTAGCATCTGCATTAGGAAAGAGAGAGGATACTTCAGATTCATCGTGGAATG 759 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 796 AATCTAAGTTAGCATCTGCATTAGGAAAGAGAGAGGATACTTCAGATTCATCGTGGAACG 855 Query 760 ATGAAGTGATTTACTCGGACGTGGAGGGTCCCTATGGATTTTCATCAGAAGCAACGAGTA 819 |||||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||| Sbjct 856 ATGAAGTGATTTACTCAGATGTGGAGGGTCCCTATGGTTTTTCATCAGAAGCAACTAGTA 915 Query 820 TGACTCATCCTGGTGAAGCTAGCTGTATAGGT-AGTGAGGATGTTCCAGTTCATACTTCT 878 |||||||||||| ||||||||||||||||| | ||||||||||||||||| ||||||||| Sbjct 916 TGACTCATCCTGATGAAGCTAGCTGTATAG-TCAGTGAGGATGTTCCAGTCCATACTTCT 974 Query 879 CCGGTAAAAGCTGATGCACCTCAGGATATCAGTGCCAGTCAATCTGTTCCTGATGATATG 938 || ||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||| Sbjct 975 CCAGTAAAAGCTGATGCAACTCAGGTTATCAGTGCCAGTAAATCTGTTCCTGATGATATG 1034 Query 939 CCTTTTGTTGAGAATGCTGATGTCTCTTTGCATGGAATCAAAGGCCTTGAAGAATTTGAA 998 ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| Sbjct 1035 CCTTTTGTTGAGAATGCTGATGTCTATTTGCATGGAATCAAAGGCTTTGAAGAATTTGAA 1094 Query 999 GCAAGTCATTCTGTGAATCCTTATCTTCCTGAGACATCTAAGGGAGAAGAATGTGAAA-A 1057 | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 1095 GTGAGTCATTCTGTGAATCCTTTTCTTCCTGAGACATCTAAGGGAGAAGAATGTGAAATA 1154 Query 1058 CA--CTCTTACTGACGCAGAGAACTTAGGAATTCATCCTGAAGGCTTAAGTATCGGCTCA 1115 | | |||||||| |||||||| ||||||||| | ||||||||||||||||| |||||| Sbjct 1155 GATACACTTACTGAGGCAGAGAATTTAGGAATTAAGCCTGAAGGCTTAAGTATTGGCTCA 1214 Query 1116 GAGGTTCCTTCATCAGACAAGCTTCTCGTTGGAGACAAAACTGAACCTCAAGGCCAAACT 1175 |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1215 GAGGTTTCTTCATCAGACAAGCTTCTCGCTGGAGACAAAACTGAACCTCAAGGCCAAACC 1274 Query 1176 GATTTGGTTGCGATCAAGGAATTTCCCAGTGCAGAGAACATAATGATATCTATGATTGAC 1235 |||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| || Sbjct 1275 GATTTGGTTGCGGTCAAGGAATTTCCCAGTGCAGAGAACATACTGATATCTAAGATTAAC 1334 Query 1236 TCTGAAGATATTGAAATGAAAGCTGAAGAGGGTGAATCATCATTAGGGAATGCACACACT 1295 ||||||||||| | ||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 1335 TCTGAAGATATCGGAATGAAAGCTGAAGAGGGTAAATCATCATTAGGGAATGCACAAACT 1394 Query 1296 GTTGAATCAGAAACATTGAGAGTTTCTCTACCTGCTGTAGATTCTATAGTTGTTGACTCG 1355 |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1395 GTTGAATCAGAAACCTTGAGAGTTTCTCTACCTGCTGTAGATTCTGTAGTTGTTGACTCA 1454 Query 1356 AATGCTGATGTGAGCAATGCAGCTAACAAAACTGGTTTAGTTGATCTTGTTGGTCATGAG 1415 ||||||||| |||||| |||||| ||||||||||||||||||||||| | |||| |||| Sbjct 1455 AATGCTGATATGAGCAGTGCAGCGAACAAAACTGGTTTAGTTGATCTCGCTGGTAATGAA 1514 Query 1416 AGTGAACTTATTCAAGCAAATGTTGTAGCTGAGGAGGGGATCAACCCAAAAGACACGCTG 1475 ||||||||||| ||||||||||||||||||||| |||||| ||| ||||||||||| || Sbjct 1515 AGTGAACTTATGCAAGCAAATGTTGTAGCTGAGAAGGGGAACAAACCAAAAGACACTTTG 1574 Query 1476 AGTTCTGAATCCTCTTGTTATGTTTCTCCGGTATCTGTTGTATTTGAGGGAGATGATGCA 1535 |||||||||||||||||||||| |||||| || |||||||||||||||||| ||||||| Sbjct 1575 AGTTCTGAATCCTCTTGTTATGCTTCTCCTGTGTCTGTTGTATTTGAGGGATCTGATGCA 1634 Query 1536 AGTGATAAGATAAAAAGTTCTTCAGAAACATCTAAAGACTCTGCCCTCCAAATCGGTGCT 1595 |||||| |||| |||||||| |||||||||| |||||||| |||||||||||| | | Sbjct 1635 AGTGATCAGATCAAAAGTTCAACAGAAACATCCAAAGACTCCGCCCTCCAAATCAG--C- 1691 Query 1596 GAATTCTGTGAAAGTAAAGATGAAGTTTGCAGAGAGATTAACAACGGAAGGCTTGTGGAG 1655 | ||| ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1692 G----CTG--AAAGTAAAGATGAAGTTTGCAGAGAGAGTAACAACGGAAGGCTTGTGGAG 1745 Query 1656 GAAAGCAGTTTCATAAACGAAACAAATAGAACGGAATATCCTATAGGCCATTCTGGATCC 1715 ||||||||||||||||||||| |||||| |||||||||||||||| |||||| |||||| Sbjct 1746 GAAAGCAGTTTCATAAACGAACCAAATAAAACGGAATATCCTATAAGCCATTTTGGATCA 1805 Query 1716 ACAGGCACTGCACCGGACACTGTTAACACAGCTAATCAGAAGTCACTGGAAAGCGGAAGG 1775 |||||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||| Sbjct 1806 ACAGGCACTGCACCTGACACTGTTAATACAGCTAATCAGACGTCACTGGAAATCGGAAGG 1865 Query 1776 ACAGAATTCAATAGAGTAGTTGGTGGCTTGGGGGTAATTCAAGCAAATGAGATTGATGGT 1835 ||||||||||||||||| ||||||||||||||||||||||||||||||||| | || ||| Sbjct 1866 ACAGAATTCAATAGAGTTGTTGGTGGCTTGGGGGTAATTCAAGCAAATGAGGTCGACGGT 1925 Query 1836 AATGTCAAAGCACAAAACTATTATGCTGAGGTCCCAGTGACAATAGAATCGAACGACCAT 1895 |||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| ||| Sbjct 1926 AATGTCAAAGCACACAACAATTATGCTGAGGTCCCAGTGACAATAGAATCAAACGATCAT 1985 Query 1896 CGGGATTTTGGAAGATTGCAGAATCTTTCAGAAGCTCACATTAGATCTCTGGTTTCAAGT 1955 || |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1986 CGAGATTTTGGGAGATTGCAGAATCTTTCAGAAGCTCACATTAGATCTCTGGTTTCTAGT 2045 Query 1956 CCGCTAGTCACTAGAAATAATACATCTAATGCGTT-TGAATCCAACTTGGGATCGGTTTC 2014 |||||||||||||||||||||||||||||||| || |||||| ||||||||| | ||||| Sbjct 2046 CCGCTAGTCACTAGAAATAATACATCTAATGC-TTCTGAATCTAACTTGGGACCAGTTTC 2104 Query 2015 AGGAGTAAGCGGTGGAGTTAACAAACCAGAAA-ACGCATCTCAGAACCAAGAGATCACCT 2073 ||| |||||| |||||||||||||| || || ||||||||||||||||||||||||||| Sbjct 2105 AGGTCTAAGCGCTGGAGTTAACAAAC-AGGAAGACGCATCTCAGAACCAAGAGATCACCT 2163 Query 2074 TGGAGAAGACAACAAGCTGGAGCACAGCAAAGGAGCAACACGTCCCGCTTAAGAACCTTC 2133 |||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||| Sbjct 2164 TGGAGAAGACAACAAGCTGGGGCACAGCAAAGGAGCAACACGTCCCTCTAAAGAACCTTC 2223 Query 2134 TGAGTGAAGCAAGATCACCAAGGCTACAACAACAACAAGCAAAGGATCATGAGAGTAACA 2193 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 2224 TGAGTGAAGCAAGATCACCAAGGCTACAACAACAA---GCAAAGGATCACGAGAGTAACA 2280 Query 2194 ACGTACCGAGAGTGAGTTCGATACTGGGACAGGAGACATCCCCTGAAGACGGTCGCTGGC 2253 || |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 2281 ACATACCGAGAGTGAGTTCGATACTGGGACAGGAGACATCCCCTGAAGATGGTCACTGGC 2340 Query 2254 CAGAGAAAAGAGAAGTGAGTGAAGAATGGAATTCGCCAGCAAAGTATCCAGTGGACTTTA 2313 ||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| | Sbjct 2341 CAGAGAAAAGAGAAGTGAGCGAGGAATGGAATTCACCAGCAAAGTATCCAGTGGACTT-A 2399 Query 2314 AA-AGAGAGGAGAAGAAAGTGAAAGGAAGACCCTTTTGGGTTCCATTTGTTTGCTGCTCC 2372 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2400 AAGAGAGAGGAGAAGAAAGTGAAAGGAAGACCCTTTTGGGTGCCATTTGTTTGCTGCTCC 2459 Query 2373 AATGTCAAATA-A--ACCACTCTATTGTATAATG 2403 ||||| ||||| | ||||||||||||||||||| Sbjct 2460 AATGTTAAATAGACCACCACTCTATTGTATAATG 2493 Score = 337 bits (182), Expect = 4e-91 Identities = 224/244 (92%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 251 TCCAATAGTTGTGGAAAAAGCTG---ATGAGAGAGTTGGGGATGTTTCTGAAGAGGATGT 307 ||||| |||||| |||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 377 TCCAACAGTTGTCGAAAAAGCTGCTAATGAGAGAATTGGGGATGTTTCTGAAGAGGATGT 436 Query 308 GTTTACTGATGCTGTTTGTGAATTTTCGAGATCTGATTCTTTCAAGGAAGAGACAGCTAC 367 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 437 GTTTACTGATGCTGTTTGTGAGTTTTCGAGATCTGATTCTTTCAAGGAAGAGACAGCTAC 496 Query 368 AAACTTCGCGGCTAAGGGTACTGAGAATCCCGGTGAAACTCAGCAGTGCAACAACTCATC 427 ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 497 AAACTTCCCGGCAAAGGGTACTGAGAATCCCGGTGAAACTCAGCAGTGCAACAATTCATC 556 Query 428 AACAGCATGTGTGATGAAAAGCCCTAAAGTGGTTCAAGAGAGTTGTGAAGTTCCACCCGT 487 || || |||| ||||||||| || ||||||||||||| || |||||||||||||| || Sbjct 557 TACGGCCTGTGAGATGAAAAGTTCTGAAGTGGTTCAAGACAGCTGTGAAGTTCCACCTGT 616 Query 488 GGAA 491 |||| Sbjct 617 GGAA 620 Score = 298 bits (161), Expect = 2e-79 Identities = 238/272 (88%), Gaps = 17/272 (6%) Strand=Plus/Plus Query 14 ACA-ACACATGGATTCTCAGGACCACT---GCAACTCTCCAGGAGGAGGTAAGAGTTGTC 69 ||| ||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 109 ACACACACATGGATTCTCAGGACCACTGCAGCAACTCTCCAGGAGGAGGTAAGA---ACC 165 Query 70 ATGTTTGTACTAAATGTGGTTGGAGTTATCCAAATCCACATCCTAGTGCTAAAAACCGCC 129 |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 166 ATGTCTGTACTAAATGTGGTTGGAGTTATTCAAATCCACATCCTAGTGCTAAAAACCGTC 225 Query 130 GTGCACACAAGAAAATCTGTGGAACCATCAAAGGATTTGAGATCTTTGATTCCGATAA-G 188 |||| |||||||||||||||||||||||||||||||||||||||||||| || || || | Sbjct 226 GTGCTCACAAGAAAATCTGTGGAACCATCAAAGGATTTGAGATCTTTGACTCTGA-AATG 284 Query 189 ACGAAACAGAATCTTGATTTGCAGGAAGAAAACTGCTT-GGTTGATGAGCAAAAACC-CC 246 | |||| ||||||||||||||| ||||||| ||| ||| || ||||||||||||||| || Sbjct 285 AAGAAAGAGAATCTTGATTTGCCGGAAGAACACT-CTTTGGATGATGAGCAAAAACCACC 343 Query 247 --C---AGGTCCAATAGTTGTGGAAAAAGCTG 273 | | |||||| |||||| |||||| ||| Sbjct 344 AACCCCAAGTCCAACAGTTGTCGAAAAATCTG 375 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 119376896010 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5