BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946985
Length=2404
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14200.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2671 0.0
> AT4G14200.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr4:8185370-8188783 REVERSE LENGTH=2625
Length=2625
Score = 2671 bits (1446), Expect = 0.0
Identities = 1750/1894 (92%), Gaps = 31/1894 (2%)
Strand=Plus/Plus
Query 521 AGTTGAAGCAGCTTCCGATG-ATCGACAAGGTGCAGAGTTTTCTACTGAAGGACACTCTA 579
||||||| ||||||| || | |||||||||||||| || ||||||||||||||||||||
Sbjct 620 AGTTGAATCAGCTTCAGA-GAATCGACAAGGTGCACAGCATTCTACTGAAGGACACTCTA 678
Query 580 TGGCATCTGAAACTGTGATTGAGTCATCATCACAGGAAGCTCAGGTCATTGACGGTGGTG 639
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 679 TGTCATCTGAAACTGTGATTGAG---TCATCACAGGAAGCTCAGGTCATTGACGGTGGTG 735
Query 640 ATACCATATCAAATGATAGATTAGATACAGAATGCAAAGGCAAGTTAACGGAAGAATCTG 699
||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||
Sbjct 736 ATACCATATCAAATGATAGATTAGAGACAGAATGCAAAGGGAAGTTAACGAAAGAATCTC 795
Query 700 AATCAAAGTTAGCATCTGCATTAGGAAAGAGAGAGGATACTTCAGATTCATCGTGGAATG 759
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 796 AATCTAAGTTAGCATCTGCATTAGGAAAGAGAGAGGATACTTCAGATTCATCGTGGAACG 855
Query 760 ATGAAGTGATTTACTCGGACGTGGAGGGTCCCTATGGATTTTCATCAGAAGCAACGAGTA 819
|||||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 856 ATGAAGTGATTTACTCAGATGTGGAGGGTCCCTATGGTTTTTCATCAGAAGCAACTAGTA 915
Query 820 TGACTCATCCTGGTGAAGCTAGCTGTATAGGT-AGTGAGGATGTTCCAGTTCATACTTCT 878
|||||||||||| ||||||||||||||||| | ||||||||||||||||| |||||||||
Sbjct 916 TGACTCATCCTGATGAAGCTAGCTGTATAG-TCAGTGAGGATGTTCCAGTCCATACTTCT 974
Query 879 CCGGTAAAAGCTGATGCACCTCAGGATATCAGTGCCAGTCAATCTGTTCCTGATGATATG 938
|| ||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||
Sbjct 975 CCAGTAAAAGCTGATGCAACTCAGGTTATCAGTGCCAGTAAATCTGTTCCTGATGATATG 1034
Query 939 CCTTTTGTTGAGAATGCTGATGTCTCTTTGCATGGAATCAAAGGCCTTGAAGAATTTGAA 998
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1035 CCTTTTGTTGAGAATGCTGATGTCTATTTGCATGGAATCAAAGGCTTTGAAGAATTTGAA 1094
Query 999 GCAAGTCATTCTGTGAATCCTTATCTTCCTGAGACATCTAAGGGAGAAGAATGTGAAA-A 1057
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1095 GTGAGTCATTCTGTGAATCCTTTTCTTCCTGAGACATCTAAGGGAGAAGAATGTGAAATA 1154
Query 1058 CA--CTCTTACTGACGCAGAGAACTTAGGAATTCATCCTGAAGGCTTAAGTATCGGCTCA 1115
| | |||||||| |||||||| ||||||||| | ||||||||||||||||| ||||||
Sbjct 1155 GATACACTTACTGAGGCAGAGAATTTAGGAATTAAGCCTGAAGGCTTAAGTATTGGCTCA 1214
Query 1116 GAGGTTCCTTCATCAGACAAGCTTCTCGTTGGAGACAAAACTGAACCTCAAGGCCAAACT 1175
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1215 GAGGTTTCTTCATCAGACAAGCTTCTCGCTGGAGACAAAACTGAACCTCAAGGCCAAACC 1274
Query 1176 GATTTGGTTGCGATCAAGGAATTTCCCAGTGCAGAGAACATAATGATATCTATGATTGAC 1235
|||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| ||
Sbjct 1275 GATTTGGTTGCGGTCAAGGAATTTCCCAGTGCAGAGAACATACTGATATCTAAGATTAAC 1334
Query 1236 TCTGAAGATATTGAAATGAAAGCTGAAGAGGGTGAATCATCATTAGGGAATGCACACACT 1295
||||||||||| | ||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1335 TCTGAAGATATCGGAATGAAAGCTGAAGAGGGTAAATCATCATTAGGGAATGCACAAACT 1394
Query 1296 GTTGAATCAGAAACATTGAGAGTTTCTCTACCTGCTGTAGATTCTATAGTTGTTGACTCG 1355
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1395 GTTGAATCAGAAACCTTGAGAGTTTCTCTACCTGCTGTAGATTCTGTAGTTGTTGACTCA 1454
Query 1356 AATGCTGATGTGAGCAATGCAGCTAACAAAACTGGTTTAGTTGATCTTGTTGGTCATGAG 1415
||||||||| |||||| |||||| ||||||||||||||||||||||| | |||| ||||
Sbjct 1455 AATGCTGATATGAGCAGTGCAGCGAACAAAACTGGTTTAGTTGATCTCGCTGGTAATGAA 1514
Query 1416 AGTGAACTTATTCAAGCAAATGTTGTAGCTGAGGAGGGGATCAACCCAAAAGACACGCTG 1475
||||||||||| ||||||||||||||||||||| |||||| ||| ||||||||||| ||
Sbjct 1515 AGTGAACTTATGCAAGCAAATGTTGTAGCTGAGAAGGGGAACAAACCAAAAGACACTTTG 1574
Query 1476 AGTTCTGAATCCTCTTGTTATGTTTCTCCGGTATCTGTTGTATTTGAGGGAGATGATGCA 1535
|||||||||||||||||||||| |||||| || |||||||||||||||||| |||||||
Sbjct 1575 AGTTCTGAATCCTCTTGTTATGCTTCTCCTGTGTCTGTTGTATTTGAGGGATCTGATGCA 1634
Query 1536 AGTGATAAGATAAAAAGTTCTTCAGAAACATCTAAAGACTCTGCCCTCCAAATCGGTGCT 1595
|||||| |||| |||||||| |||||||||| |||||||| |||||||||||| | |
Sbjct 1635 AGTGATCAGATCAAAAGTTCAACAGAAACATCCAAAGACTCCGCCCTCCAAATCAG--C- 1691
Query 1596 GAATTCTGTGAAAGTAAAGATGAAGTTTGCAGAGAGATTAACAACGGAAGGCTTGTGGAG 1655
| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1692 G----CTG--AAAGTAAAGATGAAGTTTGCAGAGAGAGTAACAACGGAAGGCTTGTGGAG 1745
Query 1656 GAAAGCAGTTTCATAAACGAAACAAATAGAACGGAATATCCTATAGGCCATTCTGGATCC 1715
||||||||||||||||||||| |||||| |||||||||||||||| |||||| ||||||
Sbjct 1746 GAAAGCAGTTTCATAAACGAACCAAATAAAACGGAATATCCTATAAGCCATTTTGGATCA 1805
Query 1716 ACAGGCACTGCACCGGACACTGTTAACACAGCTAATCAGAAGTCACTGGAAAGCGGAAGG 1775
|||||||||||||| ||||||||||| ||||||||||||| ||||||||||| |||||||
Sbjct 1806 ACAGGCACTGCACCTGACACTGTTAATACAGCTAATCAGACGTCACTGGAAATCGGAAGG 1865
Query 1776 ACAGAATTCAATAGAGTAGTTGGTGGCTTGGGGGTAATTCAAGCAAATGAGATTGATGGT 1835
||||||||||||||||| ||||||||||||||||||||||||||||||||| | || |||
Sbjct 1866 ACAGAATTCAATAGAGTTGTTGGTGGCTTGGGGGTAATTCAAGCAAATGAGGTCGACGGT 1925
Query 1836 AATGTCAAAGCACAAAACTATTATGCTGAGGTCCCAGTGACAATAGAATCGAACGACCAT 1895
|||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1926 AATGTCAAAGCACACAACAATTATGCTGAGGTCCCAGTGACAATAGAATCAAACGATCAT 1985
Query 1896 CGGGATTTTGGAAGATTGCAGAATCTTTCAGAAGCTCACATTAGATCTCTGGTTTCAAGT 1955
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1986 CGAGATTTTGGGAGATTGCAGAATCTTTCAGAAGCTCACATTAGATCTCTGGTTTCTAGT 2045
Query 1956 CCGCTAGTCACTAGAAATAATACATCTAATGCGTT-TGAATCCAACTTGGGATCGGTTTC 2014
|||||||||||||||||||||||||||||||| || |||||| ||||||||| | |||||
Sbjct 2046 CCGCTAGTCACTAGAAATAATACATCTAATGC-TTCTGAATCTAACTTGGGACCAGTTTC 2104
Query 2015 AGGAGTAAGCGGTGGAGTTAACAAACCAGAAA-ACGCATCTCAGAACCAAGAGATCACCT 2073
||| |||||| |||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 2105 AGGTCTAAGCGCTGGAGTTAACAAAC-AGGAAGACGCATCTCAGAACCAAGAGATCACCT 2163
Query 2074 TGGAGAAGACAACAAGCTGGAGCACAGCAAAGGAGCAACACGTCCCGCTTAAGAACCTTC 2133
|||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||
Sbjct 2164 TGGAGAAGACAACAAGCTGGGGCACAGCAAAGGAGCAACACGTCCCTCTAAAGAACCTTC 2223
Query 2134 TGAGTGAAGCAAGATCACCAAGGCTACAACAACAACAAGCAAAGGATCATGAGAGTAACA 2193
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 2224 TGAGTGAAGCAAGATCACCAAGGCTACAACAACAA---GCAAAGGATCACGAGAGTAACA 2280
Query 2194 ACGTACCGAGAGTGAGTTCGATACTGGGACAGGAGACATCCCCTGAAGACGGTCGCTGGC 2253
|| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 2281 ACATACCGAGAGTGAGTTCGATACTGGGACAGGAGACATCCCCTGAAGATGGTCACTGGC 2340
Query 2254 CAGAGAAAAGAGAAGTGAGTGAAGAATGGAATTCGCCAGCAAAGTATCCAGTGGACTTTA 2313
||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |
Sbjct 2341 CAGAGAAAAGAGAAGTGAGCGAGGAATGGAATTCACCAGCAAAGTATCCAGTGGACTT-A 2399
Query 2314 AA-AGAGAGGAGAAGAAAGTGAAAGGAAGACCCTTTTGGGTTCCATTTGTTTGCTGCTCC 2372
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2400 AAGAGAGAGGAGAAGAAAGTGAAAGGAAGACCCTTTTGGGTGCCATTTGTTTGCTGCTCC 2459
Query 2373 AATGTCAAATA-A--ACCACTCTATTGTATAATG 2403
||||| ||||| | |||||||||||||||||||
Sbjct 2460 AATGTTAAATAGACCACCACTCTATTGTATAATG 2493
Score = 337 bits (182), Expect = 4e-91
Identities = 224/244 (92%), Gaps = 3/244 (1%)
Strand=Plus/Plus
Query 251 TCCAATAGTTGTGGAAAAAGCTG---ATGAGAGAGTTGGGGATGTTTCTGAAGAGGATGT 307
||||| |||||| |||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 377 TCCAACAGTTGTCGAAAAAGCTGCTAATGAGAGAATTGGGGATGTTTCTGAAGAGGATGT 436
Query 308 GTTTACTGATGCTGTTTGTGAATTTTCGAGATCTGATTCTTTCAAGGAAGAGACAGCTAC 367
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 437 GTTTACTGATGCTGTTTGTGAGTTTTCGAGATCTGATTCTTTCAAGGAAGAGACAGCTAC 496
Query 368 AAACTTCGCGGCTAAGGGTACTGAGAATCCCGGTGAAACTCAGCAGTGCAACAACTCATC 427
||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 497 AAACTTCCCGGCAAAGGGTACTGAGAATCCCGGTGAAACTCAGCAGTGCAACAATTCATC 556
Query 428 AACAGCATGTGTGATGAAAAGCCCTAAAGTGGTTCAAGAGAGTTGTGAAGTTCCACCCGT 487
|| || |||| ||||||||| || ||||||||||||| || |||||||||||||| ||
Sbjct 557 TACGGCCTGTGAGATGAAAAGTTCTGAAGTGGTTCAAGACAGCTGTGAAGTTCCACCTGT 616
Query 488 GGAA 491
||||
Sbjct 617 GGAA 620
Score = 298 bits (161), Expect = 2e-79
Identities = 238/272 (88%), Gaps = 17/272 (6%)
Strand=Plus/Plus
Query 14 ACA-ACACATGGATTCTCAGGACCACT---GCAACTCTCCAGGAGGAGGTAAGAGTTGTC 69
||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 109 ACACACACATGGATTCTCAGGACCACTGCAGCAACTCTCCAGGAGGAGGTAAGA---ACC 165
Query 70 ATGTTTGTACTAAATGTGGTTGGAGTTATCCAAATCCACATCCTAGTGCTAAAAACCGCC 129
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 166 ATGTCTGTACTAAATGTGGTTGGAGTTATTCAAATCCACATCCTAGTGCTAAAAACCGTC 225
Query 130 GTGCACACAAGAAAATCTGTGGAACCATCAAAGGATTTGAGATCTTTGATTCCGATAA-G 188
|||| |||||||||||||||||||||||||||||||||||||||||||| || || || |
Sbjct 226 GTGCTCACAAGAAAATCTGTGGAACCATCAAAGGATTTGAGATCTTTGACTCTGA-AATG 284
Query 189 ACGAAACAGAATCTTGATTTGCAGGAAGAAAACTGCTT-GGTTGATGAGCAAAAACC-CC 246
| |||| ||||||||||||||| ||||||| ||| ||| || ||||||||||||||| ||
Sbjct 285 AAGAAAGAGAATCTTGATTTGCCGGAAGAACACT-CTTTGGATGATGAGCAAAAACCACC 343
Query 247 --C---AGGTCCAATAGTTGTGGAAAAAGCTG 273
| | |||||| |||||| |||||| |||
Sbjct 344 AACCCCAAGTCCAACAGTTGTCGAAAAATCTG 375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119376896010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5