BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946986
Length=941
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53690.1 | Symbols: | RING/U-box superfamily protein | chr3... 597 6e-170
AT2G26455.1 | Symbols: | pseudogene, similar to Ubiquitin conj... 442 3e-123
AT4G24470.3 | Symbols: TIFY1 | GATA-type zinc finger protein wi... 102 6e-21
AT4G01690.1 | Symbols: PPOX, HEMG1, PPO1 | Flavin containing am... 73.1 4e-12
> AT3G53690.1 | Symbols: | RING/U-box superfamily protein | chr3:19898788-19900065
REVERSE LENGTH=1193
Length=1193
Score = 597 bits (323), Expect = 6e-170
Identities = 447/504 (89%), Gaps = 20/504 (4%)
Strand=Plus/Plus
Query 115 TGCTCTAC-CTTCTACTGCAACGATTGTGTCTCGAAATATATAGCTGCAAAATTACAAGA 173
|||||| | ||||||||||||||| ||||| |||||||||||||| || |||||||||||
Sbjct 418 TGCTCT-CACTTCTACTGCAACGACTGTGTTTCGAAATATATAGCAGCTAAATTACAAGA 476
Query 174 CAACATCCTCTCAATCGAGTGTCTTGTCTCTGGTTGCAAGAGCTCTGTTCGGCTCGAGCC 233
|||||| ||||||||||| |||| ||||||||||| | |||| ||||||||||||
Sbjct 477 CAACATTCTCTCAATCGAATGTCCTGTCTCTGGTT------GTTCTGGTCGGCTCGAGCC 530
Query 234 AGATAAGTGTCGTCAAATCTTGCC-AAGAGAGGTTTTTGATCAGTGGGATGATGCTCTT- 291
|||| |||||||||| || ||||| || |||||||||||||| ||||| ||||||| ||
Sbjct 531 AGATCAGTGTCGTCAGATTTTGCCTAA-AGAGGTTTTTGATCGGTGGGGTGATGCT-TTG 588
Query 292 TCTGAAGCAGTATTGATGCGTTCAAAGAGATTATATTGTCCTTATAAGGATTGCTCTGCT 351
| |||||||||| |||||||||| |||| ||| || |||||||| |||||||||||||||
Sbjct 589 TGTGAAGCAGTAGTGATGCGTTCGAAGAAATTCTACTGTCCTTACAAGGATTGCTCTGCT 648
Query 352 TTGCTTTTCATT-GACA-AGAGTGAAGTGAAGATGAAAGATTCGGAGTGTCCTCATT-TC 408
||| ||||| || || | |||||||||| |||||||||||||||||||||||||||| ||
Sbjct 649 TTGGTTTTC-TTAGA-AGAGAGTGAAGTAAAGATGAAAGATTCGGAGTGTCCTCATTGTC 706
Query 409 CATAGAATGGTGTGTGTAGAGTGTGGGACTAAGTGGCATCCTGAGATAACTTGCGAGGAG 468
|||||||||||||||| |||||||||||| |||||||||| ||||| ||||||||||||
Sbjct 707 -ATAGAATGGTGTGTGTGGAGTGTGGGACTCAGTGGCATCCGGAGATGACTTGCGAGGAG 765
Query 469 TTTCAGAAGCTAGCAGG-GAACGAAAGAGGAAGAGATAATATTTTGCTCGCGACGATGGC 527
|||||||||||||| || |||||| |||||||||||| |||||||||| |||||||||||
Sbjct 766 TTTCAGAAGCTAGC-GGCGAACGAGAGAGGAAGAGATGATATTTTGCTTGCGACGATGGC 824
Query 528 AAAGAAAAAGAACTGGAAAAGATGTTATTCTTGCAAACTCTATATTGAGAAGTCTCAGGG 587
|||| ||||||| |||||||||||| |||||||||| ||||||||||||| ||||||||
Sbjct 825 AAAGCAAAAGAAATGGAAAAGATGTCCTTCTTGCAAATTCTATATTGAGAAATCTCAGGG 884
Query 588 TTGCTTATACATGAAATGCAGGTG 611
||||||||||||||| ||||||||
Sbjct 885 TTGCTTATACATGAAGTGCAGGTG 908
> AT2G26455.1 | Symbols: | pseudogene, similar to Ubiquitin conjugating
enzyme 7 interacting protein 4 (UbcM4- interacting
protein 4) (RING finger protein 144). (Mouse), contains a Prosite:PS00518:
Zinc finger, C3HC4 type (RING finger), signature
and Pfam:PF01485 IBR domain; blastp match of 25% identity
and 5.7e-18 P-value to SP|Q925F3|U7I4_MOUSE Ubiquitin conjugating
enzyme 7 interacting protein 4 (UbcM4- interacting
protein 4) (RING finger protein 144). (Mouse) {Mus musculus}
| chr2:11253700-11254930 REVERSE LENGTH=1231
Length=1231
Score = 442 bits (239), Expect = 3e-123
Identities = 411/491 (84%), Gaps = 23/491 (5%)
Strand=Plus/Plus
Query 130 TGCAACGATTGTGTCTCGAAATATATAGCTGCAAAATTACAAGACAACATCCTCTCAATC 189
||||||||||||||||| |||||||||||||| || |||||||||||||| |||||||||
Sbjct 532 TGCAACGATTGTGTCTCAAAATATATAGCTGCTAAGTTACAAGACAACATTCTCTCAATC 591
Query 190 GAGTGTCTTGTCTCTGGTTGCAAGAGCTCTGTTCGGCTCGAGCCAGATAAGTGTC-GTCA 248
| || | ||| ||||||| |||| | | ||||||||| ||||| || | ||||
Sbjct 592 AAATGCCCTGTTTCTGGTT------GCTCGGGGCAGCTCGAGCCCGATAAATG-CGGTCA 644
Query 249 AATCTTGCCAAGAGAGGTTTTTGATCAGT-GGGATGATGCTCTTT-CTGAAGCAGT-ATT 305
|||| |||||||||| || ||||||| || |||| || ||||||| | || || || |||
Sbjct 645 AATCCTGCCAAGAGAAGTCTTTGATCGGTGGGGA-GACGCTCTTTGC-GAGGCGGTGATT 702
Query 306 GATGCGTTCAAAGAGATTATATTGTCCTTATAAGGATTGCTCTGCTTTGCTTTTCATTG- 364
||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| |||
Sbjct 703 -ATGAGTTCAAAGAGATTCTATTGTCCTTATAAGGATTGCTCTGCTTTGCTCTTC-TTGG 760
Query 365 ACAAGAGTGAAGT-GA-A-GATGAAAG-ATTCGGAGTGTCCTCATTTCCATAGAATGGTG 420
|| ||||||||| || | |||||| | || ||||||||||||||| |||||||||||||
Sbjct 761 ACGAGAGTGAAGAAGAGAAGATGAATGTAT-CGGAGTGTCCTCATTGCCATAGAATGGTG 819
Query 421 TGTGTAGAGTGTGGGACTAAGTGGCATCCTGAGATAACTTGCGAGGAGTTTCAGAAGCTA 480
|||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 820 AGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACATGCGAGGAGTTTCAAAAGCTA 879
Query 481 GCAGGGAACGAAAGAGGAAGAGATAATATTTTGCTCGC-GACGATGGCAAAGAAAAAGAA 539
|| | ||||||||||| ||||| |||| ||| | | || |||||| ||| |||||
Sbjct 880 GCCGAGAACGAAAGAGAAAGAGGGGATATATTGTT-GAAGAATATGGCAGAGAGTAAGAA 938
Query 540 CTGGAAAAGATGTTATTCTTGCAAACTCTATATTGAGAAGTCTCAGGGTTGCTTATACAT 599
|||| ||||||| |||||||||| |||| ||||| || ||| ||||||||||||||||
Sbjct 939 GTGGAGAAGATGTCCTTCTTGCAAATTCTACATTGAAAAATCTGAGGGTTGCTTATACAT 998
Query 600 GAAATGCAGGT 610
||| |||||||
Sbjct 999 GAAGTGCAGGT 1009
> AT4G24470.3 | Symbols: TIFY1 | GATA-type zinc finger protein
with TIFY domain | chr4:12645564-12647864 FORWARD LENGTH=1305
Length=1305
Score = 102 bits (55), Expect = 6e-21
Identities = 57/58 (98%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 607 AGGTGGATGCTGTGTTGTCGTTGTTGGGTGGTTCTACTGAGCTTGCTCCTGGTCCGCA 664
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 526 AGGTGGATGCTGTGTTGTCGCTGTTGGGTGGTTCTACTGAGCTTGCTCCTGGTCCGCA 583
Score = 86.1 bits (46), Expect = 6e-16
Identities = 50/52 (96%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 666 ATGTTTCGAGAAGAAAGTAAGATACGGTGTTCGCCAAGAAATGGCCTTAAGA 717
|||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 701 ATGTTTCGAGAAGAAAGTAAGATACGGTGTTCGCCAAGAAGTTGCCTTAAGA 752
> AT4G01690.1 | Symbols: PPOX, HEMG1, PPO1 | Flavin containing
amine oxidoreductase family | chr4:729887-732433 FORWARD LENGTH=1780
Length=1780
Score = 73.1 bits (39), Expect = 4e-12
Identities = 43/45 (96%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 716 GAGATCCTACTGTGCCAAGGTTTGTGTTGTGGAATGGGAAACTGA 760
|||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 455 GAGATCCTACTGCGCCAAGGTTTGTGTTGTGGAATGGGAAATTGA 499
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46014478652
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5