BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946989
Length=1417
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14170.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2091 0.0
> AT4G14170.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr4:8176324-8178142 REVERSE LENGTH=1819
Length=1819
Score = 2091 bits (1132), Expect = 0.0
Identities = 1322/1416 (93%), Gaps = 4/1416 (0%)
Strand=Plus/Plus
Query 4 CGAAGAATCTCTTGGCTATGTTCTTGAAAGCTCGAGCTTTCTCGGTAACCACACAGAATC 63
|||||| ||| || || ||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 41 CGAAGAGTCTATTCGCAATGTTCTTGAAAGCTCGAGCTTTATCAGTAACTACACAGAATC 100
Query 64 CTCCTGATCTCTTCTCTCTTCTACATCATTCTCCAAACGCTAAGCATCTACGCCATCTCC 123
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 101 CTCCTGATCTCTTCTCGCTTCTACATCATTCTCCAAACGCTAAACATCTACGCCATCTCC 160
Query 124 ATGCTCATCTTCTTCGTACCTCTCTCTACTCCAACGTTGTGCTCAGCTCCAAGCTCGTTC 183
| ||||| ||||||||||| | |||||| ||||||||||||||||||||||||||||| |
Sbjct 161 ACGCTCACCTTCTTCGTACATTTCTCTATTCCAACGTTGTGCTCAGCTCCAAGCTCGTCC 220
Query 184 TCGCTTACTCCAAGATGAATCATCTCTTTCCCACTTCGCTTTCTGTCTTCTGGCACATGC 243
||||||| |||||| |||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 221 TCGCTTATTCCAAGCTGAACCATCTCTTTCCTACTTCGCTTTCTGTCTTCTGGCACATGC 280
Query 244 CTTGTCGCAACATTTTCTCTTGGAATATAATCATCGGTGAGTTCTCTAGATCGGGGTTTG 303
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 281 CTTATCGCAACATTTTCTCTTGGAATATAATCATCGGTGAGTTCTCTAGATCGGGTTTTG 340
Query 304 CGTCGATTTCGATAGGAAT-GTTTCTTCGTATGTGGCGAGAGTCCAACGTTAGACCGGAT 362
| || | || || | | | |||||||||||||||||||||||| ||||||||||||
Sbjct 341 CTTCCAAGTCAATTG-ATTTGTTTCTTCGTATGTGGCGAGAGTCTTGTGTTAGACCGGAT 399
Query 363 GATTTTACGCTTCCTCTTGTTCTACGAGCTTGCTCTGCTTCTCGGGAAGCGAAATTTGGA 422
|||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||
Sbjct 400 GATTTTACGCTTCCTCTTATTCTACGAGCTTGCTCTGCGTCTAGGGAAGCGAAATCTGGA 459
Query 423 GATTTGATTCATGTTCTGTGTTTGAAACTTGGGTTTAACGCAAGTTTGTTTGTTAGTTCG 482
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 460 GATTTGATTCATGTTCTGTGTTTGAAACTTGGGTTTAGCTCAAGTTTGTTTGTTAGTTCG 519
Query 483 GCTTTAGTGATTATGTATGTAGATTTGGGCGAAA-TTTTACATGCACGTAAGTTGTTCGA 541
||||||||||| |||||||||||| |||| |||| |||||||||||||||||||||||||
Sbjct 520 GCTTTAGTGATAATGTATGTAGATATGGG-GAAACTTTTACATGCACGTAAGTTGTTCGA 578
Query 542 TGATATGCCTGTGAGAGACTCTGTTCTTTATACAGCTATGTTTGGTGGTTATGTTCAGCA 601
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 579 CGATATGCCTGTGAGAGACTCTGTTCTTTATACAGCTATGTTTGGTGGGTATGTTCAGCA 638
Query 602 AGGTGAAGCTCTGTTGGGTTTGGCCGTGTTTAGAGAAATGATGTATTCTGGATTTTTGCT 661
||| |||||| |||||||||| ||| |||| ||||||||| ||||||||||||| |||
Sbjct 639 AGGAGAAGCTATGTTGGGTTTAGCCATGTTCAGAGAAATGGGGTATTCTGGATTTGCGCT 698
Query 662 GGATTCAGTGGTAATGGTGAGTTTACTTATGGCTTGTGGACAACTTGGAGCGTTGAAGCA 721
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 GGATTCAGTGGTGATGGTGAGTTTACTTATGGCTTGTGGACAACTTGGAGCGTTGAAGCA 758
Query 722 CGGGAAGAGTGTCCATGGATGGTGTATCCGGAGATGCTCTTGCTTCGGATTGAATCTTGG 781
||||||||| |||||||||||||||||| |||||||||| ||||| || |||||||| ||
Sbjct 759 CGGGAAGAGCGTCCATGGATGGTGTATCAGGAGATGCTCCTGCTTGGGCTTGAATCTCGG 818
Query 782 AAATGCGATAACAGATATGTATGTAAAGTGCTCCATACTGGACTATGCGCACACAGTATT 841
||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 819 CAATGCTATAACAGATATGTATGTAAAGTGCTCGATACTGGACTATGCGCACACTGTATT 878
Query 842 TGTAAATATGCCGAGGCGAGATGTGATCTCTTGGAGCTCTCTTATTTTGGGTTATGGCTT 901
|||||||||| |||| ||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 879 TGTAAATATGTCGAGACGAGATGTGATCTCTTGGAGCTCGCTTATTTTGGGGTATGGTTT 938
Query 902 GGATGGTGACGTGGTAGTGTCTATAAAACTCTTTGATGAGATGCTTCAGGAAGGAATTGA 961
|||||| ||||||||| ||||| | ||||||||||||||||||||| |||||||||||||
Sbjct 939 GGATGGAGACGTGGTAATGTCTTTTAAACTCTTTGATGAGATGCTTAAGGAAGGAATTGA 998
Query 962 ACCCAATGCTGTCACTTTTCTTGGTGTCTTATCAGCTTGTGCACATGGCGGTCTTGTGGA 1021
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 999 ACCCAATGCTGTCACTTTTCTTGGTGTCTTATCAGCCTGTGCCCATGGCGGTCTTGTGGA 1058
Query 1022 AAAGTCTTGGCTGTATCTCAGACTAATGCAGGAATATAAAATAGTTCCTGAACTAAAACA 1081
||| |||||||||||| |||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1059 AAAATCTTGGCTGTATTTCAGACTAATGCAGGAATATAATATAGTTCCTGAACTGAAACA 1118
Query 1082 CTATGCTAGTGTGGCGGATTGTATGTCTCGGGCAGGTCTTCTGGAGGAAGCAGAGAAGTT 1141
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1119 CTATGCTAGTGTGGCGGATTGTATGTCTCGAGCAGGTCTTCTGGAGGAAGCAGAGAAGTT 1178
Query 1142 TCTGGAAGATATGCCCGTGGAACCTGATGAGGCTGTTTTGGGTGCGGTGTTGAGTGGGTG 1201
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1179 TCTGGAAGATATGCCCGTGAAACCTGATGAGGCTGTTATGGGTGCGGTGTTGAGTGGGTG 1238
Query 1202 CAAGGTGTATGGGAATGTAGAAGTAGGGGAAAGAGTGGCGAGGAAGCTGATTCAACTTGA 1261
|||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||| |
Sbjct 1239 CAAGGTGTATGGAAATGTAGAAGTTGGGGAAAGAGTGGCGAGGGAGCTGATTCAACTTAA 1298
Query 1262 GCCGAGAAAAGGTAGCTACTATGTAACGTTGGCCGGTCTATATTCAGCTGCAGGTCGGTT 1321
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1299 GCCGAGAAAAGCTAGCTACTATGTAACGTTGGCCGGTCTATATTCAGCTGCAGGTCGGTT 1358
Query 1322 TGACGAAGCTGAGAGTCTGAGGCAGTTGATGAAGGAGAAGCAGATTTCTAAGGTTCCCGG 1381
||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1359 TGATGAAGCTGAGAGTCTGAGGCAGTGGATGAAGGAGAAACAGATTTCTAAGGTTCCCGG 1418
Query 1382 GTGTAGCTCAATATGAAAGATGGGATGCAGATTTCA 1417
||||||||||||||||||||||||||| ||||||||
Sbjct 1419 GTGTAGCTCAATATGAAAGATGGGATGGAGATTTCA 1454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69828958095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5