BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946996
Length=584
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08990.1 | Symbols: | DNA (cytosine-5-)-methyltransferase f... 370 9e-102
AT4G14140.2 | Symbols: DMT2 | DNA methyltransferase 2 | chr4:81... 353 9e-97
AT5G49160.1 | Symbols: MET1, MET2, METI, DDM2, DMT01, DMT1 | me... 320 9e-87
AT4G13610.1 | Symbols: MEE57 | DNA (cytosine-5-)-methyltransfer... 215 4e-55
> AT4G08990.1 | Symbols: | DNA (cytosine-5-)-methyltransferase
family protein | chr4:5764781-5770496 FORWARD LENGTH=4539
Length=4539
Score = 370 bits (200), Expect = 9e-102
Identities = 240/260 (92%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 61 GGTGTATCGGATACAAAGTGGGCGATCGAGTATGAAGAGCCAGCTGGGCAAGCTTTTAAA 120
|||||||| ||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 3271 GGTGTATCTAATACAAAGTGGGCGATCGAGTATGAAGAGCCAGCTGGTCATGCGTTTAAA 3330
Query 121 CAAAACCATCCTGACGCGACGGTTTTTGTTGACAACTGCAATGTGATTCTTAGGGCTATA 180
||||||||||| || || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 3331 CAAAACCATCCCGAAGCAACGGTTTTTGTTGACAACTGCAATGTCATTCTTAGGGCTATA 3390
Query 181 ATGGAGAAATGTGGAGATGTGGATGATTGTATCTCTACTACGGAGGCAGCTGAACTTGCA 240
|||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||| |
Sbjct 3391 ATGGAGAAATGTGGAGATGTCGATGATTGTGTCTCTACTGTGGAGGCAGCTGAACTTGTA 3450
Query 241 GCTAAACTTGATGAGAACCAGAAGAGTACTCTGCCACTGCCTTGTCAAGTGGATTTCATC 300
|||||||||||||||||||| |||||||| |||||||| ||| |||||| ||||||||||
Sbjct 3451 GCTAAACTTGATGAGAACCAAAAGAGTACCCTGCCACTTCCTGGTCAAGCGGATTTCATC 3510
Query 301 AACGGAGGGCCTCCATGCCA 320
| ||||||||||||||||||
Sbjct 3511 AGCGGAGGGCCTCCATGCCA 3530
Score = 279 bits (151), Expect = 1e-74
Identities = 178/191 (93%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 327 GTTCGTAGTACTAAATTTGGTG--CCTTTCCACTCAATCACGGTGAGAGACACAATCGGC 384
||||||| |||||||||||| | || |||| ||||||||||||||||||||||||||||
Sbjct 3904 GTTCGTAATACTAAATTTGGCGCACCGTTCCGCTCAATCACGGTGAGAGACACAATCGGC 3963
Query 385 GATCTTCCACTAGTAGAAAACGGAGAATCCAAGCTAAACAAAGATTATGGAGCTACTCCA 444
|||||||||||||||||||||||||| |||||| |||||||||| ||| || ||||||||
Sbjct 3964 GATCTTCCACTAGTAGAAAACGGAGAGTCCAAGATAAACAAAGAGTATAGAACTACTCCA 4023
Query 445 GTCTCGTGGTTCCAAAAGAAGATAAGAGGAAACATGATTGTTCTCACTGATCATATATGC 504
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 4024 GTCTCGTGGTTCCAAAAGAAGATAAGAGGAAACATGAGTGTTCTCACTGATCATATCTGC 4083
Query 505 AAAGGGCTGAA 515
|||||||||||
Sbjct 4084 AAAGGGCTGAA 4094
> AT4G14140.2 | Symbols: DMT2 | DNA methyltransferase 2 | chr4:8146345-8152131
FORWARD LENGTH=4638
Length=4638
Score = 353 bits (191), Expect = 9e-97
Identities = 280/320 (88%), Gaps = 18/320 (6%)
Strand=Plus/Plus
Query 2 TTTATCTTTCAAAACGCTTGAACAACATGTATTCATATGCATGGTTTATATGTACACAAG 61
|||||| ||| |||| |||||| ||| | |||| | |||||| |||| | |||| |||||
Sbjct 3327 TTTATC-TTCTAAACACTTGAA-AACTTTTATTAAGATGCAT-GTTT-TGTGTA-ACAAG 3381
Query 62 GTGTATCGGA-TACAAAGTGGGCGATCGAGTATGAAGAGCCAGCTGGGCAAGCTTTTAAA 120
||||||| | |||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 3382 GTGTATC-TACTACAAAGTGGGCGATCGAGTATGAAGAGCCAGCTGGTCATGCGTTTAAA 3440
Query 121 CAAAACCATCCTGACGCGACGGTTTTTGTTGACAACTGCAATGTGATTCTTAGGGCTATA 180
|||||||||||||| || ||||||||||||||||||||||||| | | | |||
Sbjct 3441 CAAAACCATCCTGAAGCAACGGTTTTTGTTGACAACTGCAATG-G---C--A-----ATA 3489
Query 181 ATGGAGAAATGTGGAGATGTGGATGATTGTATCTCTACTACGGAGGCAGCTGAACTTGCA 240
|||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||
Sbjct 3490 ATGGAGAAATGTGGAGATGTCGATGATTGTGTCTCTACTGTGGAGGCAGCTGAACTTGCA 3549
Query 241 GCTAAACTTGATGAGAACCAGAAGAGTACTCTGCCACTGCCTTGTCAAGTGGATTTCATC 300
|||||||||||||||||||| |||||||| |||||||| ||| ||||||| |||||||||
Sbjct 3550 GCTAAACTTGATGAGAACCAAAAGAGTACCCTGCCACTTCCTGGTCAAGTAGATTTCATC 3609
Query 301 AACGGAGGGCCTCCATGCCA 320
||||||||||||||||||||
Sbjct 3610 AACGGAGGGCCTCCATGCCA 3629
Score = 278 bits (150), Expect = 5e-74
Identities = 180/194 (93%), Gaps = 3/194 (2%)
Strand=Plus/Plus
Query 327 GTTCGTAGTACTAAATTTGGTG--CCTTTCCACTCAATCACGGTGAGAGACACAATCGGC 384
||| ||| |||||||||||||| ||||| | |||||||||||||||||||||||||||
Sbjct 4004 GTT-GTAATACTAAATTTGGTGCACCTTTTCGTTCAATCACGGTGAGAGACACAATCGGC 4062
Query 385 GATCTTCCACTAGTAGAAAACGGAGAATCCAAGCTAAACAAAGATTATGGAGCTACTCCA 444
|||||||||| |||||||||||||||||||||| |||||||||| |||||| ||||||||
Sbjct 4063 GATCTTCCACCAGTAGAAAACGGAGAATCCAAGATAAACAAAGAGTATGGAACTACTCCA 4122
Query 445 GTCTCGTGGTTCCAAAAGAAGATAAGAGGAAACATGATTGTTCTCACTGATCATATATGC 504
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 4123 GCCTCGTGGTTCCAAAAGAAGATAAGAGGAAACATGAGTGTTCTCACTGATCATATCTGC 4182
Query 505 AAAGGGCTGAACGA 518
||||||||||||||
Sbjct 4183 AAAGGGCTGAACGA 4196
> AT5G49160.1 | Symbols: MET1, MET2, METI, DDM2, DMT01, DMT1 |
methyltransferase 1 | chr5:19932230-19938369 FORWARD LENGTH=4845
Length=4845
Score = 320 bits (173), Expect = 9e-87
Identities = 232/260 (89%), Gaps = 6/260 (2%)
Strand=Plus/Plus
Query 61 GGTGTATCGGATACAAAGTGGGCGATCGAGTATGAAGAGCCAGCTGGGCAAGCTTTTAAA 120
|||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 3394 GGTGTATCTGATGCAAAGTGGGCGATTGAGTATGAAGAGCCAGCTGGGCAGGCTTTTAAA 3453
Query 121 CAAAACCATCCTGACG-CGACGGTTTTTGTTGACAACTGCAATGTGATTCTTAGGGCTAT 179
|||||||||||||| | | || ||||||||||||||||||||||||||||||||||||||
Sbjct 3454 CAAAACCATCCTGA-GTCAACAGTTTTTGTTGACAACTGCAATGTGATTCTTAGGGCTAT 3512
Query 180 AATGGAGAAATGTGGAGATGTGGATGATTGTATCTCTACTACGGAGGCAGCTGAACTT-G 238
|||||||||| |||||||| ||||||||| |||||||||| |||||| |||| || |
Sbjct 3513 AATGGAGAAAGGTGGAGATCAAGATGATTGTGTCTCTACTACAGAGGCAAATGAA-TTAG 3571
Query 239 CAGCTAAACTTGA-TGAGAACCAGAAGAGTACTCTGCCACTGCCTTGTCAAGTGGATTTC 297
|||||||||| | |||| | |||||||||||||||||||||||| |||||||||| |||
Sbjct 3572 CAGCTAAACTA-ACTGAGGAGCAGAAGAGTACTCTGCCACTGCCTGGTCAAGTGGACTTC 3630
Query 298 ATCAACGGAGGGCCTCCATG 317
||||| || || ||||||||
Sbjct 3631 ATCAATGGTGGACCTCCATG 3650
> AT4G13610.1 | Symbols: MEE57 | DNA (cytosine-5-)-methyltransferase
family protein | chr4:7915022-7921231 FORWARD LENGTH=4215
Length=4215
Score = 215 bits (116), Expect = 4e-55
Identities = 138/149 (93%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 172 AGGGCTATAATGGAGAAATGTGGAGATGTGGATGATTGTATCTCTACTACGGAGGCAGCT 231
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3109 AGGGCTATAATGGAGAAATGTGGAGATGTTGATGATTGTATCTCTACTACGGAGGCAGCT 3168
Query 232 GAACTTGCAGCTAAACTTGATGAGAACCAGAAGAGTACTCTGCCACTGCCTTGTCAAGTG 291
||||||||| | |||||||||||||||||||||||||| || ||||| || ||||||||
Sbjct 3169 GAACTTGCAACGAAACTTGATGAGAACCAGAAGAGTACCCTACCACTTCCCGGTCAAGTG 3228
Query 292 GATTTCATCAACGGAGGGCCTCCATGCCA 320
|||||||||| ||||||||||| |||||
Sbjct 3229 GATTTCATCAGTGGAGGGCCTCCGTGCCA 3257
Score = 156 bits (84), Expect = 3e-37
Identities = 104/114 (91%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 61 GGTGTATCGGATACAAAGTGGGCGATCGAGTATGAAGAGCCAGCTGGGCAAGCTTTTAAA 120
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 2965 GGTGTATCCGATACAAAGTGGGCGATCGAGTATGAAGAGCCAGCTGCACAAGCTTTCAAA 3024
Query 121 CAAAACCATCCTGACGCGACGGTTTTTGTTGACAACTGCAATGTGATTCTTAGG 174
||||||||||| | | |||||||||||||||||||||||||| |||||||||
Sbjct 3025 CAAAACCATCCCAAAACAACGGTTTTTGTTGACAACTGCAATGTAATTCTTAGG 3078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28080888173
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5