BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946999
Length=635
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14110.1 | Symbols: COP9, CSN8, FUS7, EMB143 | COP9 signalos... 968 0.0
> AT4G14110.1 | Symbols: COP9, CSN8, FUS7, EMB143 | COP9 signalosome,
subunit CSN8 | chr4:8132886-8134920 REVERSE LENGTH=810
Length=810
Score = 968 bits (524), Expect = 0.0
Identities = 600/637 (94%), Gaps = 4/637 (1%)
Strand=Plus/Plus
Query 1 TAGTGAAATCGAACCCTGTCATGGATCTTTCTCCAGTGAAGGAAGCTTTGGCCGTTAAAT 60
||||| ||||||| | |||||||||||||| || || |||||||||||||||| ||||
Sbjct 34 TAGTGCAATCGAAACAAGTCATGGATCTTTCGCCTGTTAAGGAAGCTTTGGCCGCCAAAT 93
Query 61 CCTTTGATAAAATCGCTGAAATCTGCGATAATCTCATGCTTCAGGTTGCTTCCGAAGGAA 120
||||||| |||||||| || |||||||||| |||||||||||||||||||||||||||||
Sbjct 94 CCTTTGACAAAATCGCCGATATCTGCGATACTCTCATGCTTCAGGTTGCTTCCGAAGGAA 153
Query 121 TTGATTATCATGATGATTGGCCTTACGCAATCCATCTTCTGGGTTACTTTTACGTCGACG 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 154 TTGAATATCATGATGATTGGCCTTACGCAATCCATCTTCTGGGTTACTTTTACGTTGACG 213
Query 181 ATTGTGATAGTGCCCGTTTTCTCTGGAAAACGATACCTACAGCTATCAAGGAGAGGAAGC 240
|||||||||| || ||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 214 ATTGTGATAGCGCACGTTTCCTCTGGAAAAGGATACCTACAGCTATCAAGGAGAGGAAGC 273
Query 241 CTGAAGTTGTTGCAGCTTGGAAGATTGGTCAGAAGCTGTGGACACACGACTATGCAGGTG 300
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 274 CTGAAGTTGTTGCAGCTTGGGGGATTGGTCAGAAGCTGTGGACACACGACTATGCAGGTG 333
Query 301 TATATGGAGCTATTCGGGGTTATGATTGGAGTCAAGAAGCTAAAGAGATGGTTGCTGCCT 360
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 334 TATATGAAGCTATTCGGGGTTATGATTGGAGTCAAGAAGCTAAAGATATGGTTGCTGCCT 393
Query 361 TCTCAGATCTTTACACAAAAAGGATGTTTCAGCTTTTGTTGTCTGCCTACTCCACAATTA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 TCTCAGATCTTTACACAAAAAGGATGTTTCAGCTTTTGTTGTCTGCCTACTCCACAATTA 453
Query 421 CCATTCATGATTTAGCTCTATTCCTTGGGATGACGGAGGATGATGCCACAACTTATGTTG 480
|||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 454 CCATCCATGATTTAGCTCTTTTCCTAGGGATGACGGAGGATGATGCCACAACTTATGTTG 513
Query 481 TAGAGAATGGATGGACAGTGGATGCAACTTCTCAAATGGTGACTGTGAAGAAAGAAGCTG 540
|||||||||||||||||||||||||| |||||||||||| || |||||||||| ||||||
Sbjct 514 TAGAGAATGGATGGACAGTGGATGCAGCTTCTCAAATGGCGAGTGTGAAGAAACAAGCTG 573
Query 541 TTAAAAGAGAGCAAAAGGTGGATTCATCGAAGCTGCAACGCTTGACGGAGTATGTGTTCC 600
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 574 TTAAAAGAGAGCAAAAGGTGGATTCATCGAAGCTACAACGCTTGACGGAGTATGTGTTCC 633
Query 601 ACCTTGAACATTAGAACAAAG-GACC-AGTCTCCTAT 635
||||||||||||| ||| ||| | || | ||||||||
Sbjct 634 ACCTTGAACATTAAAACTAAGTG-CCGA-TCTCCTAT 668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30642829670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5