BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947001
Length=1402
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14090.1 | Symbols: | UDP-Glycosyltransferase superfamily p... 2078 0.0
> AT4G14090.1 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr4:8122188-8123835 REVERSE LENGTH=1648
Length=1648
Score = 2078 bits (1125), Expect = 0.0
Identities = 1310/1397 (94%), Gaps = 22/1397 (2%)
Strand=Plus/Plus
Query 1 ACATATTCAAAACA-TCTAAAATGGCCACTTCCATCAATGGTT-CC--CGTCGTCCACAC 56
|||| ||||||||| |||||||||||||||||| ||||||||| || |||||||||||
Sbjct 11 ACATCTTCAAAACATTCTAAAATGGCCACTTCCGTCAATGGTTCCCATCGTCGTCCACAT 70
Query 57 TACTTGCTTGTAACATTCCCAGCGCAAGGTCACATAAACCCGGCCCTCCAACTAGCCAAC 116
||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 71 TACTTGCTTGTAACATTCCCAGCGCAAGGTCACATCAACCCGGCGCTTCAACTAGCCAAC 130
Query 117 CGCCTCATCCACCACGGCGCAACCGTCACATACTCCACTGCCA-TCTCAGCTCACCGTCG 175
||||||||||||||||| |||||||||||||||||||| | || |||| |||||||| ||
Sbjct 131 CGCCTCATCCACCACGGTGCAACCGTCACATACTCCACCG-CAGTCTCTGCTCACCGACG 189
Query 176 TATGGGCGAGCCACCTTCCACAAAAGGCT-TATCCTTCGCTTGGTTCACCGATGGATTCG 234
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 190 TATGGGCGAGCCACCTTCCACAAAAGG-TCTATCCTTCGCTTGGTTCACCGATGGATTCG 248
Query 235 ACGACGGTCTCAAATCCTTCGAAGACCAGAAAATCTACATGTCCGAACTCAAACGCTGTG 294
||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 249 ACGACGGTCTCAAGTCATTCGAAGACCAGAAAATCTACATGTCCGAACTCAAACGATGTG 308
Query 295 GTTCAAACGCCCTAAGAGACATTATCAAAGCCAATCTTGACG------CC---ACAGAGC 345
||||||||||||| |||||||| ||||||||||||||||||| || |||||||
Sbjct 309 GTTCAAACGCCCTGAGAGACATCATCAAAGCCAATCTTGACGCCACCACCGAAACAGAGC 368
Query 346 CTATCACCGGGGTAATCTACTCTGTTCTCGTCCCGTGGGTTTCCACGGTAGCGCGTGAGT 405
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 369 CTATCACCGGGGTAATCTACTCTGTTCTCGTCCCGTGGGTTTCTACGGTAGCGCGTGAGT 428
Query 406 TTCACCTCCCTACTACACTTCTCTGGATTGAACCAGCTACTGTACTAGACATCTACTACT 465
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 TTCACCTCCCAACTACACTTCTCTGGATTGAACCAGCTACTGTACTAGACATCTACTACT 488
Query 466 ACTACTTCAACGCCTCCTACAAACATCTCTTCGACGTTGAACCGATTAAATTACCGAAAC 525
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 ACTACTTCAACACCTCTTACAAACATCTCTTCGACGTTGAACCGATTAAATTACCGAAAC 548
Query 526 TGCCATTGATCACCACCGGAGACCTCCCGTCGTTTCTTCAACCGTCGAAGGCATTACCGT 585
||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 549 TGCCACTGATCACCACCGGTGACCTCCCGTCGTTTCTTCAACCTTCGAAGGCATTACCGT 608
Query 586 CAGCTCTTGTGACTTTAAAAGAGCACATCGAAGCTCTCGAATCCGAATCAAACCCTAAGA 645
|||||||||||||| ||| ||| || ||||||||||||||| | ||||||||||||||||
Sbjct 609 CAGCTCTTGTGACTCTAAGAGAACATATCGAAGCTCTCGAAACGGAATCAAACCCTAAGA 668
Query 646 TCCTCGTGAACACTTTCTCTGCTTTAGAACACGATGCTTTAACCTCAGTGGAGAAACTCA 705
| || || ||||| ||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 669 TTCTTGTTAACACATTCTCTGCTTTGGAACACGATGCTTTAACCTCTGTTGAGAAACTCA 728
Query 706 AAATGATTCCAATAGGACCGTTGGTTTCTTCCTCCTCCGACGGTAAAACCGATCTTTTCA 765
| ||||| ||||| |||||||||||||| | |||||||| |||||||||||||||||||
Sbjct 729 AGATGATCCCAATCGGACCGTTGGTTTC-T--TCCTCCGAGGGTAAAACCGATCTTTTCA 785
Query 766 AATCTTCCGACGAGGATTACACGAAATGGCTAGATTCAAAGCTCGAGAAG-TCAGTGATT 824
||||||||||||||||||||||||||||| |||| || ||||||||| || |||||||||
Sbjct 786 AATCTTCCGACGAGGATTACACGAAATGGTTAGACTCGAAGCTCGAG-AGATCAGTGATT 844
Query 825 TACATTTCCTTAGGCACACACGCCGATGATTTACCGGAGAAACACATGGAAGCGCTTACT 884
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 845 TACATTTCCTTAGGCACACACGCCGATGATTTACCAGAGAAACACATGGAAGCGCTTACT 904
Query 885 CAAGGCGTGTTAGCCACAAACAGACCGTTTTTATGGATCGTGAGGGAGAAAAATCCagaa 944
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 CACGGCGTGTTAGCTACAAACAGACCGTTTTTATGGATCGTGAGGGAGAAAAATCCAGAA 964
Query 945 gagaagaagaagaaTCGGTTTCTTGAATTGATCAGAGGAAGTGATCGAGGATTGGTGGTG 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 GAGAAGAAGAAGAATCGGTTTCTTGAATTGATCAGAGGAAGTGATCGAGGATTGGTGGTG 1024
Query 1005 GGATGGTGTTCTCAGACGGCGGTTTTGGCGCATTGTGCGGTGGGATGTTTTGTGACTCAT 1064
||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 1025 GGATGGTGTTCTCAGACAGCTGTTTTGGCGCATTGTGCTGTGGGATGTTTTGTGACTCAT 1084
Query 1065 TGTGGTTGGAATTCTACGTTGGAGAGTTTAGAGAGTGGTGTTCCGGTGGTGGCGTTTCCG 1124
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1085 TGTGGTTGGAATTCGACGTTGGAGAGTTTAGAGAGTGGTGTTCCGGTGGTTGCGTTTCCG 1144
Query 1125 CAGTTTGCTGATCAGTGTACGACGGCGAAGCTTGTTGAGGATACGTGGAGGATTGGAGTG 1184
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1145 CAGTTTGCTGATCAGTGTACAACGGCGAAGCTTGTGGAGGATACGTGGAGGATTGGAGTG 1204
Query 1185 AAGGTGAAGGTTGGAGAGGAAGGAGATGTAGATGGGGATGAGATTAGACGGTGTTTggag 1244
|||||||||||||| |||||||||||||| |||||||| ||||||||| |||||||||||
Sbjct 1205 AAGGTGAAGGTTGGGGAGGAAGGAGATGTGGATGGGGAGGAGATTAGAAGGTGTTTGGAG 1264
Query 1245 aaggtgatgagtggcggagaggaggcggaggagatgagagagaatgcggcgaggtggaag 1304
|||||||||||||| ||||| |||||||||||||||||||||||||| | || |||||||
Sbjct 1265 AAGGTGATGAGTGGTGGAGAAGAGGCGGAGGAGATGAGAGAGAATGCAGAGAAGTGGAAG 1324
Query 1305 gTGATGGCTGTTGATGCGGCGGCGGAAGGTGGACCGTCGGATTTGAATCTTAAGGGTTTT 1364
| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1325 GCGATGGCTGTTGATGCGGCAGCGGAAGGTGGACCGTCGGATTTGAATCTTAAAGGTTTT 1384
Query 1365 GTGGAAGAGGATGAGTA 1381
||||| |||||||||||
Sbjct 1385 GTGGACGAGGATGAGTA 1401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69075949920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5