BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947009
Length=1513
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14030.1 | Symbols: SBP1 | selenium-binding protein 1 | chr4... 2298 0.0
AT4G14040.1 | Symbols: EDA38, SBP2 | selenium-binding protein 2... 1576 0.0
> AT4G14030.1 | Symbols: SBP1 | selenium-binding protein 1 | chr4:8097918-8100242
REVERSE LENGTH=1753
Length=1753
Score = 2298 bits (1244), Expect = 0.0
Identities = 1432/1522 (94%), Gaps = 16/1522 (1%)
Strand=Plus/Plus
Query 1 TTTGACTTCAC--A-A-AGAG--AGAGAGATGGCGACGGAAACGGAAGTGGT-GGT-TGC 52
||||||||||| | | |||| |||||||||||||||||||||||||| || | | |
Sbjct 49 TTTGACTTCACATAGAGAGAGATAGAGAGATGGCGACGGAAACGGAAGTTGTAGCTCCGG 108
Query 53 T-CCGGTAAGCAACGGTGGAAGCAAAGGATGTTGCAAGTACGGTGGTCCTGGTTACGCAA 111
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 109 TAACGGTAAGCAACGGCGGAAGCAAAGGATGTTGCAAGTACGGTGGTCCTGGTTACGCGA 168
Query 112 CGCCTCTCGCCGCTATGTCTGGTCCGAGT--GAGAAACTTATCTACGTCACCGCCGTCTA 169
| ||||||||||||||||||||||| | | ||||||||||||||||| |||||||||||
Sbjct 169 CTCCTCTCGCCGCTATGTCTGGTCC-A-TCGGAGAAACTTATCTACGTAACCGCCGTCTA 226
Query 170 CACCGGAACTGGAATAGATAAACCGGACTATTTGGCGACGGTGGATGTGGATCCGAGCTC 229
||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 227 CACCGGAACTGGAATAGATAAACCGGATTATTTGGCGACGGTGGATGTAGATCCAAGCTC 286
Query 230 GCCTTCGTATTCAAGGGTTATTCATAGATTGCCAATGCCTTTTGTTGGTGATGAGCTTCA 289
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 287 GCCTTCGTATTCAAGTGTTATTCATAGATTACCAATGCCTTTTGTTGGTGATGAGCTTCA 346
Query 290 TCATTCTGGTTGGAACTCTTGTAGTTCTTGCCATGGTGATGCTTCTGCTGATAGACGTTA 349
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 347 TCATTCTGGTTGGAACTCTTGTAGTTCTTGCCATGGTGATGCTTCTGTTGATAGACGTTA 406
Query 350 TCTCGTGTTACCGTCTCTTATATCTGGTCGTATTTATGCGATTGATACTAAGGAAAACCC 409
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 407 TCTCGTGTTACCGTCTCTTATATCTGGTCGCATTTATGCGATTGATACTAAGGAAAACCC 466
Query 410 GAGGGCTCCGTCTTTGTATAAGTATGTTGATCCTAAAGAGATTGCTGATAAGACCGGATT 469
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 467 GAGGGCTCCGTCTTTGTATAAGTATGTTGATCCTAAAGAGATTGCTGATAAGACTGGATT 526
Query 470 GGCGTTTCCACATACGGCTCATTGCCTTGCTACGGGTGAGATCTTGGTGTCGTGTCTTGG 529
||||||||| || |||||||||||||| || ||||| |||||||||||||| ||||||||
Sbjct 527 GGCGTTTCCTCACACGGCTCATTGCCTCGCCACGGGCGAGATCTTGGTGTCCTGTCTTGG 586
Query 530 GGACGAAGAGGGGAACGCCAAGGGGAATGGGTTTCTTCTTCTTGATTCTGATTTTAACAT 589
|| ||||||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 587 AGATGAAGAGGGGAATGCTAAGGGGAATGGGTTTCTTCTTCTTGACTCTGATTTTAACAT 646
Query 590 CAAGAATAGGTGGGAGAAACCAGGACACAGTCCCTTGTTTGGGTATGATTTTTGGTACCA 649
||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||
Sbjct 647 CAAGAATAGGTGGGAGAAACCAGGACATAGTCCTTTGTATGGGTATGATTTTTGGTACCA 706
Query 650 ACCTCGGCACAAGACCATGATCAGCACATCTTGGGGAGCACCTAAAGCTTTCTCCAAAGG 709
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 707 ACCTCGGCACAAGACCATGATCAGCACATCTTGGGGAGCACCTAAAGCCTTCTCTAAAGG 766
Query 710 TTTCAATCTCCAACATGTTGCGGATGGCTTATACGGAAGTCATCTACATGTTTATAGTTG 769
||||||||| || || ||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 767 TTTCAATCTTCAGCACGTTGCTGATGGCTTGTATGGAAGTCATCTACATGTTTATAGTTG 826
Query 770 GCCAGGAGGTGAAATGAAACAATTAATTGACCTTGGACCGACTGGTCTCTTACCTTTGGA 829
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 GCCAGGAGGTGAAATAAAACAATTAATTGACCTTGGACCGACTGGTCTCTTACCTTTGGA 886
Query 830 GATTAGATTCTTGCACGAGCCGTCTAAAGATACAGGGTTTGTTGGGAGTGCCTTGTCAAG 889
||||||||||||||| || || ||||||||||||||||||||||||||||||||||| ||
Sbjct 887 GATTAGATTCTTGCATGATCCATCTAAAGATACAGGGTTTGTTGGGAGTGCCTTGTCGAG 946
Query 890 TAATATGATAAGATTTTTCAAGAACAGTGATGAAACATGGAGCCATGAGGTGGTTATATC 949
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 947 TAATATGATAAGATTTTTCAAGAACAGTGATGAAACATGGAGCCATGAGGTTGTTATATC 1006
Query 950 AGTTAAACCGCTGAAAGTAGAAAACTGGATTCTTCCAGAAATGCCGGGGCTTATCACCGA 1009
||||||||| ||||||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1007 GGTTAAACCGTTGAAAGTCGAAAACTGGATACTTCCAGAAATGCCGGGGCTAATCACCGA 1066
Query 1010 CTTCTTGATCTCCCTCGATGACCGATTCATCTACTTTGTAAACTGGCTCCATGGAGACGT 1069
||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| |
Sbjct 1067 CTTCTTGATCTCCCTCGATGACCGATTTATTTACTTTGTGAACTGGCTCCATGGAGACAT 1126
Query 1070 TCGTCAGTACAACATTGAGGACCCTAAAAACCCTATCTTAACAGGACAAATTTGGGTCGG 1129
||||||||||||||| |||||||||||||||||| | |||||||| ||||||||||| ||
Sbjct 1127 TCGTCAGTACAACATAGAGGACCCTAAAAACCCTGTATTAACAGGGCAAATTTGGGTTGG 1186
Query 1130 AGGATTACTACAAAAGGGCAGTCCTGTTAAGGCGGTTGGAGAAGACGGCAACACTTTCCA 1189
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1187 AGGATTACTACAAAAGGGCAGTCCTGTTAAGGCGGTTGGAGAAGACGGAAACACTTTCCA 1246
Query 1190 ATTCGATGTTCCTCAGATCAAGGGTAACTCTCTACGAGGAGGACCTCAAATGATCCAGCT 1249
|||||| ||||||||||||||||| || ||| ||||||| |||||||||||||| |||||
Sbjct 1247 ATTCGAGGTTCCTCAGATCAAGGGGAAATCTTTACGAGGTGGACCTCAAATGATTCAGCT 1306
Query 1250 GAGCCTTGATGGGAAACGATTGTATGCAACAAACTCGCTGTTTAGCGCATGGGATCGTCA 1309
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 GAGCCTCGATGGGAAACGATTGTATGCAACAAACTCGCTGTTTAGCGCATGGGATCGTCA 1366
Query 1310 GTTTTACCCGGAAATCATGGAGAAAGGCTCACACATAATTCAGATTGATGTTGATACAGA 1369
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1367 GTTTTATCCTGAAATCATGGAGAAAGGCTCACACATAATTCAGATTGATGTTGATACAGA 1426
Query 1370 CAAAGGTGGTCTCACCATAAACCCTGACTTCTTTGTGGACTTTGGTGATGAACCGGACGG 1429
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1427 AAAAGGTGGTCTCACCATAAACCCTGATTTCTTTGTGGACTTTGGTGATGAACCAGACGG 1486
Query 1430 TCCTGCACTAGCCCACGAGATGAGATATCCCGGTGGAGACTGCACTTCCGATATCTGGAT 1489
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1487 TCCTTCACTAGCCCACGAGATGAGATATCCAGGTGGAGACTGCACTTCCGATATCTGGAT 1546
Query 1490 TTGAATTTGGCCTGTCTGTTTA 1511
||||||||||| | | ||||||
Sbjct 1547 TTGAATTTGGC-T-T-TGTTTA 1565
> AT4G14040.1 | Symbols: EDA38, SBP2 | selenium-binding protein
2 | chr4:8100349-8102875 REVERSE LENGTH=1853
Length=1853
Score = 1576 bits (853), Expect = 0.0
Identities = 1262/1459 (86%), Gaps = 29/1459 (2%)
Strand=Plus/Plus
Query 55 CGGTAAGCAACGGTGGAAGCAAAGGATGTTGCAAGTACGGTGGTCCTGGTTACGCAACGC 114
|||| ||||| || |||||||||||||||||||| | ||||| |||||||| ||||
Sbjct 76 CGGTGAGCAATGGCAAAAGCAAAGGATGTTGCAAGT-C--CGGTCCAGGTTACGCGACGC 132
Query 115 CTCTCGCCGCTATGTCTGGTCCGA-GTGAGAAA-CTTATCTACGTCACCGCCGTCTACAC 172
|||||||||| ||| | ||||| | | || ||| || ||||| ||||| ||| | ||| |
Sbjct 133 CTCTCGCCGCCATGGCCGGTCC-ACGGGA-AAAGCTCATCTATGTCACTGCCCTTTACTC 190
Query 173 CGGAACTGGAATAGATAAACCGGACTATTTGGCGACGGTGGATGTGGATCCGAGCTCGCC 232
|||||| || ||| ||||||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct 191 CGGAACGGGGCGAGACAAACCGGACTACTTGGCAACGGTGGATGTGGATCCAAGCTCACC 250
Query 233 TTCGTATTCAAGGGTTATTCATAGATTGCCAATGCCTTTTGTTGGTGATGAGCTTCATCA 292
| | |||||| || ||||| ||| | |||||| | | | || ||||||||||| ||
Sbjct 251 CACATTTTCAAGCGTCATTCACAGACTAAAAATGCCATATATAGGAGATGAGCTTCACCA 310
Query 293 TTCTGGTTGGAACTCTTGTAGTTCTTGCCATGGTGATGCTTCTGCTGATAGACGTTATCT 352
|||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 311 CACTGGTTGGAACTCTTGCAGCTCTTGCCATGGTGATGCTTCTGCTGATAGACGTTACCT 370
Query 353 CGTGTTACC-GTCTCTTATATCTGGTCGTATTTATGCGATTGATACTAAGGA-AAACCCG 410
|| ||||| | || | || |||||||| || ||||| || || || || || ||||
Sbjct 371 TGTCTTACCAGGCT-TAATTTCTGGTCGCATCTATGCAATCGACAC-AAAGACCGACCCA 428
Query 411 AGGGCTCCGTCTTTGTATAA-GTATGTTGATCCTAAAGAGATTGCTGATAAGACCGGATT 469
| ||||||||||||||| || || ||| || ||||| ||||||||||| ||||| |||||
Sbjct 429 AAGGCTCCGTCTTTGTACAAGGT-TGTAGAGCCTAAGGAGATTGCTGAAAAGACAGGATT 487
Query 470 GGCGTTTCCACATACGGCTCATTGCCTTGCTAC-GGGTGAGATCTTGGTGTCGTGTCTTG 528
|| ||||||||||| |||||||||| ||| | ||| || || |||||||| || ||||
Sbjct 488 AGCATTTCCACATACATCTCATTGCCTAGCTTCAGGG-GATATGTTGGTGTCATGCCTTG 546
Query 529 GGGACGAAGAGGGGAACGCCAAGGGGAATGGGTTTCTTCTT-CTTGATTCTGATTTTAAC 587
||||| |||| || |||||||| ||||| ||||||||| || || || ||||| || ||
Sbjct 547 GGGACAAAGAAGGAAACGCCAAAGGGAACGGGTTTCTT-TTGCTAGACTCTGACTTCAAT 605
Query 588 ATCAAGAA-TAGGTGGGAGAAACCAGGACACAGTCCCTTGTTTGGGTATGATTTTTGGTA 646
|||| || |||||||| ||||||||||| |||| |||||||| ||||||||||||||
Sbjct 606 GTCAA-AAGCAGGTGGGACAAACCAGGACATGGTCCTTTGTTTGGTTATGATTTTTGGTA 664
Query 647 CCAACCTCGGCACAAGACCATGATCAGCACATCTTGGGGAGCACCTAAAGCTTTCTCCAA 706
|||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 665 CCAACCTCGGTTCAAGACCATGATCAGCACTTCTTGGGGTGCACCTAAAGCCTTCTCCAA 724
Query 707 AGGTTTCAATCTCCAACATGTTGCGGATGGCTTATACGGAAGTCATCTACATGTTTAT-A 765
||||||||||||||| ||||||||||||||||| || ||||||||| | ||| ||||| |
Sbjct 725 AGGTTTCAATCTCCAGCATGTTGCGGATGGCTTGTATGGAAGTCATTTGCATATTTATCA 784
Query 766 GTTGGCCAGGAGGTGAAATGAAACA-ATTAATTGACCTTGGACCGACTGGTCTCTTACCT 824
||||| | ||||||||||||||| | |||||||||||||| || ||||||||||||
Sbjct 785 -ATGGCCTGAAGGTGAAATGAAACAGA-TAATTGACCTTGGAAATACCGGTCTCTTACCT 842
Query 825 -TTGGAGATTAGATTCTTGCACGAGCCGTCTAAAGATACAGGGTTTGTTGGGAGTGCCTT 883
|| ||||| ||||||||||| || || |||||||||||||||| |||||||||||| ||
Sbjct 843 CTT-GAGATCAGATTCTTGCATGATCCTTCTAAAGATACAGGGTATGTTGGGAGTGCTTT 901
Query 884 GTCAAGTAATATGATAAGATTTTTCAAGAACAGTGATGAAACATGGAGCCATGAGGTGGT 943
||| |||||||||||||| |||||||||||||||||||| || |||||||||||||| ||
Sbjct 902 GTCTAGTAATATGATAAGGTTTTTCAAGAACAGTGATGACACGTGGAGCCATGAGGTTGT 961
Query 944 TATATCAGTTAAACCGCTGAAAGTAGAAAACTGGATTCTTCCAGAAATGCCGGGGCTTAT 1003
|||||| ||||||||| ||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 962 TATATCGGTTAAACCGTTGAAAGTCGAAAACTGGATACTTCCAGAAATGCCGGGGCTTAT 1021
Query 1004 CACCGACTTCTTGATCTCCCTCGATGACCGATTCATCTACTTTGTAAACTGGCTCCATGG 1063
|||||||||||||||||||||||||||||| || |||||||||| |||||||| |||||
Sbjct 1022 CACCGACTTCTTGATCTCCCTCGATGACCGGTTTTTCTACTTTGTGAACTGGCTTCATGG 1081
Query 1064 AGACGTTCGTCAGTACAACATTGAGGACCCTAAAAACCCTATCTTAACAGGACAAATTTG 1123
|||| |||||||||||||||| || |||||||||||||| ||||||| |||||||| ||
Sbjct 1082 AGACATTCGTCAGTACAACATCGAAGACCCTAAAAACCCGGTCTTAACCGGACAAATATG 1141
Query 1124 GGTCGGAGGATTACTACAAAAGGGCAGTCCTGT-TAAGGCGGTTGGAGAAGACGGCAACA 1182
|||||||||||||||||||||||| |||||| | |||||| ||||||||||| || || |
Sbjct 1142 GGTCGGAGGATTACTACAAAAGGGTAGTCCT-TATAAGGCTGTTGGAGAAGATGGTAATA 1200
Query 1183 CTTTCCAATTCGATGTTCCTCAGATCAAGGGTAACTCTCTACGAGGAGGACCTCAAATGA 1242
||| ||||||||||||||||||||||||||| || |||||| ||| ||||||||| ||||
Sbjct 1201 CTTACCAATTCGATGTTCCTCAGATCAAGGGGAAGTCTCTAAGAGCAGGACCTCAGATGA 1260
Query 1243 TCCAGCTGAGCCTTGATGGGAAACGATTGTATGCAACAAACTCGCTGTTTAGCGCATGGG 1302
|||| || ||||| ||||||||| |||| ||||| ||||||||||| |||||||||||||
Sbjct 1261 TCCAACTAAGCCTAGATGGGAAAAGATTATATGCGACAAACTCGCTATTTAGCGCATGGG 1320
Query 1303 ATCGTCAGTTTTACCCGGAAATCATGGAGAAAGGCTCACACATAATTCAGATTGATGTTG 1362
| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1321 ACCGTCAGTTTTACCCGGAAATCATGGAGAAAGGCTCACACATAATTCAAATCGATGTTG 1380
Query 1363 ATACAGACAAAGGTGGTCTCAC-CATAAACCCTGACTTCTTTGTGGACTTTGGTGATGAA 1421
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1381 ATACAGACAAAGGTGGTCTCACTC-TAAACCCTGACTTCTTTGTGGACTTTGGTGATGAA 1439
Query 1422 CCGGACGGTCCTGCACTAGCCCACGAGATGAGATATCCCGGTGGAGACTGCACTTCCGAT 1481
|| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1440 CCAGACGGTCCTGCACTAGCTCACGAGATGAGATATCCCGGCGGAGACTGCACTTCCGAT 1499
Query 1482 ATCTGGATTTGAATTTGGC 1500
|||||||| ||| ||||||
Sbjct 1500 ATCTGGATCTGATTTTGGC 1518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74648210415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5