BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947013

Length=392
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G14010.1 | Symbols: RALFL32 | ralf-like 32 | chr4:8092833-80...   553    5e-157


> AT4G14010.1 | Symbols: RALFL32 | ralf-like 32 | chr4:8092833-8093382 
REVERSE LENGTH=550
Length=550

 Score =  553 bits (299),  Expect = 5e-157
 Identities = 353/378 (93%), Gaps = 7/378 (2%)
 Strand=Plus/Plus

Query  11   CACTAACAAAATGGAGATAAAACCCTCTACGATCTTCTTCACCATCACCATCTTC-TTCG  69
            |||| |||||||||||||||||||||||| ||| |||| |||||||||||||||| ||| 
Sbjct  10   CACTTACAAAATGGAGATAAAACCCTCTAGGATATTCTCCACCATCACCATCTTCTTTC-  68

Query  70   TCTGCCTTCT--T-GCACACGTCACCTCCAAGGCATCATCATCATCTATGTGTAATGGAT  126
            ||||||||||  | ||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct  69   TCTGCCTTCTACTAGCACACGTCACCTCCAAGGCATCATCATCATCTCTGTGCAATGGAT  128

Query  127  CGGTGGCAGAGTGCAGCAACGTGGTGGAGACAGAGGAAATGACG-GTGATAATGGAGTCT  185
            | ||||| |||||||||| | ||||||||||||||||||||| | |||||||||||||||
Sbjct  129  CTGTGGCGGAGTGCAGCAGCATGGTGGAGACAGAGGAAATGA-GTGTGATAATGGAGTCT  187

Query  186  TGGTCAAGCCAGAGGTTGACGGAGGAGCAGGCGCATAAGCTTTCGTATGGAGCTTTGAGG  245
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  188  TGGTCAAGCCAGAGGTTGACGGAGGAGCAGGCACATAAGCTTTCGTATGGAGCTTTGAGG  247

Query  246  AGGAATCAGCCTGCTTGCGACGGTGGTAAACGTGGCGAGTCTTACTCTACTCAATGTCTT  305
            |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct  248  AGGAATCAGCCTGCTTGCGATGGTGGTAAACGAGGCGAGTCTTACTCAACTCAATGTCTT  307

Query  306  CCTCCGCCGTCTAATCCTTATAGTAGAGGCTGCTCTAAGCATTACCGATGCGGGCGTGAC  365
            ||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  308  CCTCCACCGTCTAACCCTTATAGTAGAGGCTGCTCTAAGCATTACCGATGCGGCCGTGAC  367

Query  366  TCTTGACCATTCACAATC  383
            |||||||||||||| |||
Sbjct  368  TCTTGACCATTCACCATC  385



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18498531632


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5