BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947019
Length=1614
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13990.1 | Symbols: | Exostosin family protein | chr4:80843... 2508 0.0
> AT4G13990.1 | Symbols: | Exostosin family protein | chr4:8084395-8086095
FORWARD LENGTH=1701
Length=1701
Score = 2508 bits (1358), Expect = 0.0
Identities = 1517/1594 (95%), Gaps = 10/1594 (1%)
Strand=Plus/Plus
Query 22 ATGCGACCCAAGAATTATTCTCAGATGGAGAAACCCATCTCCATCGCCACGGGGAAGTTC 81
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1 ATGCGACCCAAGAATTATTCTCAGATGGAGAAACCCATCTCCATCACGACGGGGAAGTT- 59
Query 82 CGTACcaacaacaacaacaacaacaacCATAACAATGTCTGGTTCGTTGTTCCACTCTTC 141
| | || ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 60 --T-CGGAC--CAACAACAACAACAATCATAACAATGTCTGGTTCGTTGTTCCACTCTTC 114
Query 142 TTTATCCTCTGTTTCGTTCTCCTCTGTTTCGACTACTCTGCTCTCTTCACCGACACAGAC 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 TTTATCCTCTGTTTCGTTCTCCTCTGTTTCGACTACTCTGCTCTCTTCACCGACACAGAC 174
Query 202 GAAACCGCTTTCTCAATTCCTGACGTTACCCAGAAATCAACTTCCTCTGAATTCACCAAA 261
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 175 GAAACCGCTTTCTCAATTCCCGACGTTACCCAGAAATCAACATCCTCTGAATTCACGAAA 234
Query 262 GATGACAACTTTTCTCGATTTCTCGACGACCCATCTCCTGATTCTTCTTGCTCCGGTCGG 321
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 235 GATGACAACTTTTCTCGATTTCCCGACGACCCATCTCCTGATTCTTCCTGCTCCGGTCGG 294
Query 322 TATATTTACGTTCATGAACTTCCTTATAGATTCAATGGTGAATTGCTTGATAATTGTTTT 381
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 295 TATATTTACGTTCATGAACTTCCGTATAGATTCAATGGTGATTTGCTTGATAATTGCTTT 354
Query 382 AAGATTACTAGAGGAACCGAGAAGGATATTTGTCCTTATATCGAAAACTATGGTTTTGGT 441
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 355 AAGATTACTAGAGGAACCGAGAAAGATATTTGTCCTTACATCGAAAACTATGGTTTTGGT 414
Query 442 CCTGTGATTAAGAATTACGAGAATGTGTTGTTGAAACATAGTTGGTTTACGACGAATCAG 501
||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 415 CCTGTCATTAAGAATTACGAGAATGTGTTGTTGAAACAAAGTTGGTTTACGACCAATCAG 474
Query 502 TTTATGCTTGAGGTGATTTTCCACAACAAGATGATGAATTACAGGTGTTTGACCAATGAT 561
|| ||||| |||||||| ||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 475 TTCATGCTCGAGGTGATATTCCACAACAAGATGATAAATTACAGATGTTTGACTAATGAT 534
Query 562 TCGTCTCTAGCTTCTGCGGTTTTCGTGCCGTTTTACGCAGGTCTTGATATGAGTAGGTAT 621
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TCGTCACTAGCGTCTGCGGTTTTCGTGCCGTTTTACGCAGGTCTTGATATGAGTAGGTAT 594
Query 622 CTTTGGGGTTTCAACATTTCGGTTAGAGATTCTTCGTCTCATGAGCTGATGAATTGGCTT 681
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 595 CTTTGGGGTTTCAACATTACGGTTAGAGATTCTTCGTCTCATGAGCTGATGGATTGGCTT 654
Query 682 GTGGTACAGAAAGAGTGGGGTCGAATGTCTGGTAGAGACCATTTCTTGGTTTCAGGAAGG 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GTGGTACAGAAAGAGTGGGGTCGAATGTCTGGTAGAGACCATTTCTTGGTTTCAGGAAGG 714
Query 742 ATTGCTTGGGATTTCAGGAGACAGACTGATAATGAATCTGATTGGGGAAGCAAGCTTAGG 801
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 715 ATTGCTTGGGATTTCAGGAGACAGACTGATAACGAATCTGATTGGGGAAGCAAGCTTCGG 774
Query 802 TTCTTACCGGAGTCGCGAAACATGTCGATGTTGTCTATTGAATCGAGTTCATGGAAGAAC 861
|||||||| |||||||| ||||||||||||||||| || ||||||||||| ||||||||
Sbjct 775 TTCTTACCCGAGTCGCGGAACATGTCGATGTTGTCCATCGAATCGAGTTCTTGGAAGAAT 834
Query 862 GATTACGCTATTCCGTATCCAACCTGTTTCCATCCTAGATCAGTGGATGA-AGTTGTGGA 920
|||||||||||||||||||| || ||||||||||| |||||||||||||| | |||||||
Sbjct 835 GATTACGCTATTCCGTATCCGACTTGTTTCCATCCAAGATCAGTGGATGAGA-TTGTGGA 893
Query 921 GTGGCAAGAGCTAATGAGGTCTCAAAAACGGGAGTATCTATTTACCTTTGCGGGTGCTCC 980
|||||| |||||||||||||||| |||||| ||||||||||| |||||||||||||||||
Sbjct 894 GTGGCAGGAGCTAATGAGGTCTCGAAAACGCGAGTATCTATTCACCTTTGCGGGTGCTCC 953
Query 981 AAGGCCTGAATATAAAGACTCAGTTCGAGGGAAGATCATTGATGAATGTTTGGAATCAAA 1040
||||||||||||||||||||| |||||||||||||| || ||||| |||||||| |||||
Sbjct 954 AAGGCCTGAATATAAAGACTCGGTTCGAGGGAAGATTATAGATGAGTGTTTGGAGTCAAA 1013
Query 1041 GAAGCAATGTTACTTGCTAGACTGTAACTATGGGAATGTGAATTGTGACAACCCTGTCAA 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GAAGCAATGTTACTTGCTAGACTGTAACTATGGGAATGTGAATTGTGACAACCCTGTCAA 1073
Query 1101 TGTGATGAAGGTTTTCAGGAACTCGGTGTTTTGTCTCCAGCCACCGGGAGATTCTTACAC 1160
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1074 TGTGATGAAGGTTTTCAGGAACTCGGTGTTTTGTCTTCAGCCACCGGGTGATTCTTACAC 1133
Query 1161 TAGAAGGTCAATGTTTGATTCGATATTGGCAGGCTGCATTCCGGTGTTCTTCCATCCAGG 1220
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TAGAAGGTCAATGTTTGATTCAATATTGGCAGGCTGCATTCCGGTGTTCTTCCATCCAGG 1193
Query 1221 GACAGCGTACGCTCAATACAAGTGGCATTTGCCCAAGAACCACTCGAGTTACTCGGTTTA 1280
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1194 GACAGCGTACGCTCAATACAAGTGGCATTTGCCCAAGAATCACTCGAGTTACTCGGTTTA 1253
Query 1281 TCTACCGGTAAAGGATGTAAAGGAGTGGAATATCATAATCAGGGAGAGGTTGATTGAGAT 1340
||||||||| |||||||| |||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1254 TCTACCGGTTAAGGATGTGAAGGAGTGGAATATCAAAATCAAGGAGAGGTTGATTGAGAT 1313
Query 1341 TCCAGAAGAAAGAGTGGTGAGATTGAGAGAAGAGGTTATAAGGTTGATACCGAAGGTGGT 1400
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1314 TCCAGAGGAAAGAGTGGTGAGGTTGAGAGAAGAGGTTATAAGGTTGATACCGAAGGTTGT 1373
Query 1401 CTACGCTGATCCGAAGTATGGATCGGATGGGAATGAAGATGCATTTGAGCTGGCTGTGAA 1460
|||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1374 CTACGCTGATCCGAAGTACGGATCGGATGGGAGTGAAGATGCATTTGAGTTGGCTGTGAA 1433
Query 1461 GGGAATGTTAGG-GAAGATTCAAGAAGTGAGAGAGATGATGAGACAAGGGAAAGATGGTA 1519
||||||||| || || |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1434 GGGAATGTT-GGAGAGGATTGAAGAAGTGAGAGAGATGATGAGACAAGGGAAAGATGGTA 1492
Query 1520 GTGATGGGTTTGATGATAGAGATGATTATAAATATACTTTTTCTCCATATGAAGAACCTC 1579
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1493 GTGATGGGTTTGATGATAGAGATGATTATAAGTATACTTTTTCTCCATATGAAGAACCTC 1552
Query 1580 AAGTTTTGGCATAAAGTGGAAAATGTGTCATTAT 1613
|||||||||| ||||||||||||| |||||||||
Sbjct 1553 AAGTTTTGGCTTAAAGTGGAAAATATGTCATTAT 1586
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79718465460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5