BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947025
Length=1145
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36840.1 | Symbols: | Galactose oxidase/kelch repeat superf... 239 5e-62
> AT4G36840.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:17351353-17352945 FORWARD LENGTH=1593
Length=1593
Score = 239 bits (129), Expect = 5e-62
Identities = 584/794 (74%), Gaps = 69/794 (9%)
Strand=Plus/Plus
Query 94 TCGAGATTGGACTTCGCGGCCTTAGCTATTGCCTCCAAG-AATCACCGGTCTCTGGTGGT 152
|||||||||||| | |||||| || | | ||||||| ||| |||| ||||| ||
Sbjct 468 TCGAGATTGGACCAAACAGCCTTATCTCTCG-CTCCAAGAAAT-ACCGCTCTCTCGTAAC 525
Query 153 TTCCCCTGAGCTCAGGGA-CTTGAGATGGCAGCA--GCGTTGCA-TGGAGCCATCTCTCT 208
|||||||||||| | | | | ||| || | | | |||||| | ||||||||| |||
Sbjct 526 ATCCCCTGAGCTC-TGCAGCACGCGATCGCTG-ATTG-GTTGCACT-GAGCCATCTTTCT 581
Query 209 ACGTATGCTTGCGCATCTTTCCAGAACCAAGCCCACGCTGGTTCATCCTCCACCCCATGC 268
||| |||||||||||||| || || |||| ||| ||||||||| |||| | | |
Sbjct 582 TCGTCTGCTTGCGCATCTTACCTGATCCAACCCCTCGCTGGTTCGTCCT-TA---CGGGT 637
Query 269 A-ACGTTGGCTGAAACCGAT-CCATATGGACTTGTATCAGGCTCCGAAATCAGCCTCCTC 326
| ||| | |||| ||| | |||| | || |||||||||||| ||||| || ||
Sbjct 638 AGTCGTCGACTGAGGCCGGTCCCAT-CGCACCCCTATCAGGCTCCGGAATCA---TCTTC 693
Query 327 TTTTGTAGTGA-TGGGTTGTGGCA--TATG-TAT-T-ATTGGTGGACTCGTAGACGGCAA 380
|||||| || | || ||| || | |||| ||| | || |||||| || || |||||||
Sbjct 694 TTTTGTGGT-AGTGAATTGGGGGATCTATGTTATGTAATCGGTGGAATCATAAACGGCAA 752
Query 381 ACCCACTTCCGAAGTCTCGTTTTTCGATTGTTTCAAGCACAAATGGTATCGCATGCCGCC 440
||||||||||| |||| ||| || | ||||| || | |||| | ||| | ||| |
Sbjct 753 TCCCACTTCCGATGTCTTGTTCCTCAACTGTTTTTCTCAGACATGGCACCGCGTCCCGTC 812
Query 441 AATGAAGATGGCTCGTGCTTCCGCATCGGCAAGCCTGAT-GACAGATTCGAAGATATATG 499
||||||||||||||||||||||||||||||||||| || ||| | |||||| || |
Sbjct 813 TATGAAGATGGCTCGTGCTTCCGCATCGGCAAGCCTCATAGACGG----GAAGATCTACG 868
Query 500 TGTTTGGAGGGTGCGGGGATGATGTCGCCAATTCCTCAAACTGGGCAGAGGTGTTCGATG 559
| |||||||||||| || || ||| |||||||||||||||| ||||| ||||||
Sbjct 869 TTTTTGGAGGGTGCCCAGAGGA---CGCTGATTCCTCAAACTGGGCGGAGGTATTCGATC 925
Query 560 TC-GCT-ACCCTAACTTGGGATTTCTTGTATGTGTTTACGCCCAAGATGCCCCTTAATAT 617
| | | ||| |||||||| | | || || | ||||| |||||| ||| || |||
Sbjct 926 -CAGTTTACCA-AACTTGGGGTATATT-TAA-T----ACGCCGAAGATGGCCCATAGTAT 977
Query 618 CCAAC-AAAGTGTGGTAATGATAAAAGAGAAGGAGGTTTACGTAGTGGATGAGGATGGTC 676
| ||| |||||||||| |||| | |||||| ||||||||| ||||||||||| || |
Sbjct 978 C-AACCAAAGTGTGGT---GATAGAGGAGAAGAAGGTTTACGCCGTGGATGAGGA-GGAC 1032
Query 677 AAAA-CTTCT--CTTTCTCACCAAGTAAATGTATGTTTGTGGCAAGG-GGCAAAACAGAT 732
||| ||| | ||| || |||||| || ||| | | ||| || | || |||| ||||
Sbjct 1033 CAAAGCTT-TAGCTT-CTTGCCAAGTGAAGGTA-GAATCTGGAAAAGCGGAAAAAAAGAT 1089
Query 733 TCTATACC-AGGAAACATTTACAGAAACGATTGGTGTGTCATTGGGACATT-CTTATTTT 790
|||| | ||||| | | || ||||||||||||||||||||| ||| || || |
Sbjct 1090 TCTA-AGGTAGGAAG--T--A--GACACGATTGGTGTGTCATTGGGAAATTACT-ATACT 1141
Query 791 GTCGTGGTACCCGCGGAAGAATATTGTGGTGTTTGCCCTATGAGTTGCATTGGAAGGAAG 850
|||||| ||| ||||| |||||| | ||||| || |||||||| | ||||| || |
Sbjct 1142 GTCGTGCTACTCGCGGTAGAATACTATGGTGCCAACCAGATGAGTTGGACTGGAAAGAGG 1201
Query 851 TCAAGGGTTTGGAA 864
| || |||||||||
Sbjct 1202 TAAAAGGTTTGGAA 1215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56174409855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5