BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947030
Length=1456
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13930.1 | Symbols: SHM4 | serine hydroxymethyltransferase 4... 2438 0.0
AT4G13890.1 | Symbols: SHM5, EDA36, EDA37 | Pyridoxal phosphate... 1448 0.0
> AT4G13930.1 | Symbols: SHM4 | serine hydroxymethyltransferase
4 | chr4:8047692-8050106 REVERSE LENGTH=1822
Length=1822
Score = 2438 bits (1320), Expect = 0.0
Identities = 1408/1451 (97%), Gaps = 3/1451 (0%)
Strand=Plus/Plus
Query 1 CCATTCAACAATCT-C--CGAAGATGGAACCAGTTTCTTCATGGGGAAACACCTCCCTCA 57
|||||||||||||| | ||||||||||||||| ||||||||||| |||||||| |||
Sbjct 63 CCATTCAACAATCTACAAAGAAGATGGAACCAGTCTCTTCATGGGGTAACACCTCTCTCG 122
Query 58 TCACCGTAGATCCAGAGATCCATGACCTAATCGAGAAGGAGAAACGTCGGCAATGTCGAG 117
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 123 TCTCCGTAGATCCAGAGATCCACGACCTAATCGAGAAGGAGAAACGTCGGCAATGTCGAG 182
Query 118 GAATCGAACTTATCGCCTCCGAGAATTTCACTTCCTTCGCCGTCATCGAAGCTCTCGGAA 177
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 GAATCGAACTTATCGCTTCCGAGAATTTCACTTCCTTCGCCGTCATCGAAGCTCTCGGAA 242
Query 178 GTGCTTTAACCAACAAATACTCTGAAGGTATGCCTGGTAATCGTTACTATGGAGGTAACG 237
|||| ||||||||||||||||| |||||||| |||||||||||||| || ||||||||||
Sbjct 243 GTGCCTTAACCAACAAATACTCCGAAGGTATTCCTGGTAATCGTTATTACGGAGGTAACG 302
Query 238 AATTCATCGATCAGATCGAGAATCTTTGCCGTTCAAGAGCTCTCGAAGCTTTCCATTGTG 297
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 AATTCATCGATGAGATCGAGAATCTTTGCCGTTCAAGAGCTCTCGAAGCTTTCCATTGTG 362
Query 298 ATCCAGCAGCGTGGGGCGTTAATGTTCAGCCTTATTCTGGATCTCCGGCGAATTTCGCTG 357
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 363 ATCCAGCAGCGTGGGGCGTTAATGTTCAGCCGTATTCTGGATCTCCGGCAAATTTCGCTG 422
Query 358 CTTACACGGCTTTGCTTCAGCCTCACGATCGTATCATGGGGCTTGATTTGCCTTCAGGTG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 CTTACACGGCTTTGCTTCAGCCTCACGATCGTATCATGGGGCTTGATTTGCCTTCAGGTG 482
Query 418 GTCATTTGACTCATGGTTACTATACATCTGGTGGTAAGAAGATCTCTGCGACTTCGATCT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 GTCATTTGACTCATGGTTACTATACATCTGGTGGTAAGAAGATCTCTGCGACTTCGATCT 542
Query 478 ACTTTGAGAGTCTTCCGTATAAGGTGAATTTCACCACTGGTTACATTGATTACGAGAAGC 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 543 ACTTTGAGAGTCTTCCGTATAAGGTGAATTTCACCACTGGTTACATTGATTACGATAAGC 602
Query 538 TTGAAGAGAAGGCGTTGGATTTTAGGCCAAAGTTGCTTATCTGTGGTGGTAGTGCGTATC 597
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 603 TTGAAGAGAAGGCGTTGGATTTCAGGCCTAAGTTGCTTATCTGTGGTGGTAGTGCGTATC 662
Query 598 CTAGGGATTGGGATTACGCTAGATTGAGAGCTATTGCTGATAAGGTTGGAGCTCTTTTGC 657
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 663 CTAGGGATTGGGATTACGCTAGATTTAGAGCTATTGCTGATAAGGTTGGAGCTCTTTTGC 722
Query 658 TTTGTGATATGGCTCACATCAGTGGTCTCGTTGCTGCTCAGGAAGCTGCAAACCCGTTTG 717
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 723 TTTGTGACATGGCTCACATCAGTGGTCTCGTTGCTGCTCAGGAAGCTGCAAACCCATTTG 782
Query 718 AGTACTGTGACGTTGTGACAACCACAACCCACAAGAGTTTGAGGGGTCCAAGGGCTGGTA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 AGTACTGTGACGTTGTGACAACCACAACCCACAAGAGTTTGAGGGGTCCAAGGGCTGGTA 842
Query 778 TGATCTTCTACAGGAAGGGCCCAAAACCACCAAAGAAGGGTCAACCCGAGGGTGCAGTCT 837
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 843 TGATTTTCTACAGGAAGGGTCCAAAACCACCAAAGAAGGGTCAACCCGAGGGTGCAGTCT 902
Query 838 ATGACTTTGAGGACAAAATCAACTTTGCTGTATTCCCTGCGCTTCAAGGTGGTCCTCACA 897
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 ATGATTTTGAGGACAAAATCAACTTTGCTGTATTCCCTGCGCTTCAAGGTGGTCCTCACA 962
Query 898 ATCACCAGATCGGTGCTCTAGCTGTTGCGTTGAAGCAGGCTAATACTCCTGGGTTCAAGG 957
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 ATCACCAGATTGGTGCTCTAGCTGTTGCGTTGAAGCAGGCTAATACTCCTGGGTTCAAGG 1022
Query 958 TCTACGCAAAACAGGTGAAAGCCAATGCTGTTGCACTTGGAAACTACCTAATGAGCAAGG 1017
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1023 TCTACGCAAAACAAGTGAAAGCCAATGCTGTTGCCCTTGGAAACTACCTAATGAGCAAGG 1082
Query 1018 GTTACCAGATTGTGACCAATGGAACTGAGAACCACCTTGTTCTCTGGGATCTTCGCCCTC 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 GTTACCAGATTGTGACCAATGGAACTGAGAACCACCTTGTTCTCTGGGATCTTCGCCCTC 1142
Query 1078 TTGGATTGACCGGTAACAAGGTTGAGAAGCTCTGCGATCTGTGCAGCATTACTTTGAACA 1137
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1143 TTGGATTGACCGGAAACAAGGTTGAGAAGCTCTGCGATCTGTGCAGCATTACATTGAACA 1202
Query 1138 AGAATGCAGTATTTGGAGACAGTAGTGCTCTTGCTCCTGGAGGTGTAAGAATCGGTACAC 1197
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1203 AGAACGCAGTATTTGGAGACAGTAGTGCTCTTGCTCCTGGAGGTGTAAGAATCGGTGCAC 1262
Query 1198 CCGCAATGACTTCGAGAGGATTGGTGGAGAAGGACTTTGAGCAGATAGGAGAATTCCTGA 1257
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 CCGCGATGACATCGAGAGGATTGGTGGAGAAGGACTTTGAGCAGATAGGAGAATTCCTGA 1322
Query 1258 GCCGTGCAGTGACACTGACATTGGACATCCAGAAGACATACGGTAAGTTGTTGAAGGACT 1317
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1323 GCCGTGCAGTGACACTGACGTTGGACATCCAAAAGACATACGGTAAGTTGTTGAAGGACT 1382
Query 1318 TCAACAAGGGTTTGGTGAACAACAAAGATCTCGATCAGCTCAAGGCTGACGTCGAGAAGT 1377
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1383 TCAACAAGGGTTTGGTGAACAACAAAGATCTCGATCAGCTCAAGGCTGATGTCGAGAAGT 1442
Query 1378 TCTCGGCCTCGTATGAGATGCCTGGATTCCTCATGTCTGAGATGAAGTACAAGGATTAGA 1437
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 TCTCGGCGTCTTATGAGATGCCTGGATTCCTCATGTCTGAGATGAAGTACAAGGATTAGA 1502
Query 1438 GAtctctctct 1448
||||| |||||
Sbjct 1503 GATCTTTCTCT 1513
> AT4G13890.1 | Symbols: SHM5, EDA36, EDA37 | Pyridoxal phosphate
(PLP)-dependent transferases superfamily protein | chr4:8031972-8033723
REVERSE LENGTH=1592
Length=1592
Score = 1448 bits (784), Expect = 0.0
Identities = 1235/1451 (85%), Gaps = 37/1451 (3%)
Strand=Plus/Plus
Query 19 AGATGGAACCAGTTTCTTCATGGGGAAACACCTCCCTCATCAC--CGTAGATCCAGAGAT 76
||||||||||||| | ||| |||||||||| | | || | || ||| ||||| |||||
Sbjct 4 AGATGGAACCAGTCTATTCTTGGGGAAACA-C-GCATCTTGACTTCGTCGATCCGGAGAT 61
Query 77 CCATGACCTAATCGAGAAGGAGAAACGTCGGCAATGTCGAGGAATCGAACTTATCGCCTC 136
| | |||||||||||||||||||||| ||| |||||||||||||||||||| || || |
Sbjct 62 CTACGACCTAATCGAGAAGGAGAAACATCGTCAATGTCGAGGAATCGAACTCATAGCAGC 121
Query 137 CGAGAATTTCACTTCCTTCGCCGTCATCGAAGCTCTCGGAAG-TGCTTTAACCAACAAAT 195
|||||||||||||||| | |||||||| |||||||||||||| ||| |||||||||||||
Sbjct 122 CGAGAATTTCACTTCCGTGGCCGTCATGGAAGCTCTCGGAAGTTGC-TTAACCAACAAAT 180
Query 196 ACTCTGAAGGTATGCCTGGTAATCGTTACTATGGAGGTAACGAATTCATCGATCAGATCG 255
|||| |||||||||||||||||||||||||| ||||||| ||| ||||||||| |||| |
Sbjct 181 ACTCGGAAGGTATGCCTGGTAATCGTTACTACGGAGGTACCGAGTTCATCGATGAGATAG 240
Query 256 AGAATCTTTGCCGTTCAAGAGCTCTCGAAGCTTTCCATTGTGATCCAGCAG-CGTGGGGC 314
||| ||| ||||| ||| | |||||||||| |||||||| |||||| || ||||||
Sbjct 241 AGAGTCTCTGCCGCTCACGCTCTCTCGAAGCCTTCCATTGCAATCCAG-AGAAATGGGGC 299
Query 315 GTTAATGTTCAGCCTTATTCTGGATCTCCGGCGAATTTCGCTGCTTACACGGCTTTGCTT 374
||||| ||||||||||| ||||| || || ||||||||||| || ||||| || |||||
Sbjct 300 GTTAACGTTCAGCCTTACTCTGGTTCCCCTGCGAATTTCGCAGCCTACACCGCCTTGCTC 359
Query 375 CAGCCTCACGATCGTATCATGGGGCTTGATTTGCCTTCAGGTGGTCATTTGACTCATGGT 434
|||||||| |||||||||||||||||||||||||| |||||||||||| | || ||||||
Sbjct 360 CAGCCTCATGATCGTATCATGGGGCTTGATTTGCCATCAGGTGGTCATATAACGCATGGT 419
Query 435 TACTATA-CATCTGGTGGTAAGAAGATCTCTGCGACTTCGATCTACTTTGAGAGTCTTCC 493
||||||| | |||||||| ||||| ||||| ||||| |||||||||||||| | |||||
Sbjct 420 TACTATAGC-TCTGGTGGGAAGAACATCTCCGCGACCTCGATCTACTTTGAAAACCTTCC 478
Query 494 GTATAAGGTGAATTTCACCACTGGTTACATTGATTACGAGAAGCTTGAAGAGAAGGCGT- 552
|| |||||| ||| || |||||||||||||||||||| || ||||| ||||| || |
Sbjct 479 CTACAAGGTGGATTCCAAGACTGGTTACATTGATTACGACAAACTTGAGGAGAAAGC-TA 537
Query 553 TGGATTTTAGGCCAAAGTTGCTTATCTGTGGTGGTAGTGCGTATCCTAGGGATTGGGATT 612
||||||||||||| ||||| |||||||||| || | | | || |||||||| |||||||
Sbjct 538 TGGATTTTAGGCCTAAGTTAATTATCTGTGGAGGCACTTCTTACCCTAGGGAATGGGATT 597
Query 613 ACGCTAGATTGAGAGCTATTGCTGATAAGGTTGGAGCTCTTTTGCTTTGTGATATGGCTC 672
|||| ||||| || ||| | || || |||||||||||| ||||||| |||||||||||||
Sbjct 598 ACGCGAGATTCAGGGCTGTCGCCGACAAGGTTGGAGCTTTTTTGCTCTGTGATATGGCTC 657
Query 673 ACATCAGTGGTCTCGTTGCTGCTCAGGAAGCTGCAAACCCGTTTGAGTACTGTGACGTTG 732
| | ||||| |||||||||||||||||||| ||| ||||||| ||||||||||||||||
Sbjct 658 ATAACAGTGCCCTCGTTGCTGCTCAGGAAGCCGCAGACCCGTTCGAGTACTGTGACGTTG 717
Query 733 TGACAACCACAACCCACAAGAGTTTGAGGGGTCCAAGGGCTGGTATGATCTTCTACAGGA 792
||||||| |||| |||||||| ||||| ||||||||||||||||||||||| || || |
Sbjct 718 TGACAACGTCAACTCACAAGAGCTTGAGAGGTCCAAGGGCTGGTATGATCTTTTATAGAA 777
Query 793 AGGGCCCAAAACCA-CCAAAGAAGGGTCAACCCGAGGGTGCAGTCTATGACTTT-GA-GG 849
|||| ||||||||| || |||||||| ||||||||||||| |||||| || ||| || |
Sbjct 778 AGGGACCAAAACCAGCC-AAGAAGGGCCAACCCGAGGGTGAAGTCTACGA-TTTCGACGC 835
Query 850 ACAAAATCAACTTTGCTGTATTCCCTGCGCTTCAAGGTGGTCCTCACAATCACCAGATCG 909
| |||||||||| ||| |||||||||||||||||| |||||||||||||| || |||| |
Sbjct 836 A-AAAATCAACTCTGCGGTATTCCCTGCGCTTCAAAGTGGTCCTCACAATAACAAGATTG 894
Query 910 GTGCTCTAGCTGTTGCGTTGAAGCAGGCTAAT-ACTCCTGGGTTCAAGGTCTACGCAAAA 968
||||||||||||||||||||||||||| | || ||||| | ||||| || || ||||||
Sbjct 895 GTGCTCTAGCTGTTGCGTTGAAGCAGG-TTATGGCTCCTAGCTTCAAAGTTTATGCAAAA 953
Query 969 CAGGTGAAAGCCAATGCTG-TTGCACTTGGAAACTACCTAATGAGCAAGGG-T-TACCAG 1025
||||||||||| ||||||| |||| |||| || ||||||||| | ||||| | || |
Sbjct 954 CAGGTGAAAGCTAATGCTGCTTGC-CTTGCAAGCTACCTAATAAATAAGGGATATA-C-T 1010
Query 1026 ATTGTGACCAATGGAACTGAGAACCACCTTGTTCTCTGGGATCTTCGCCCTCTTGGATTG 1085
|||| ||| |||||||||| ||||||||| |||| ||||||||||||||||||||||||
Sbjct 1011 CTTGTAACCGATGGAACTGATAACCACCTTATTCTTTGGGATCTTCGCCCTCTTGGATTG 1070
Query 1086 ACCGGTAACAAGGTTGAGAAGCTCTGCGA-TCTGTGC-AGCATTACTTTGAACAAGAATG 1143
||||||||||||||||||||| | || || | ||||| | |||||||||||||| |||||
Sbjct 1071 ACCGGTAACAAGGTTGAGAAGGTTTGTGAAT-TGTGCTA-CATTACTTTGAACAGGAATG 1128
Query 1144 CAGTATTTGGAGACAGTAGTGCTCTTGCTCCTGGAGGTGTAAGAATCGGTACACCCGCAA 1203
| ||||| ||||||| |||| ||||||||| ||||||||||||||||||||||| || |
Sbjct 1129 CGGTATTCGGAGACACTAGTTTTCTTGCTCCCGGAGGTGTAAGAATCGGTACACCGGCGA 1188
Query 1204 TGACTTCGAGAGGATTGGTGGAGAAGGACTTTGAGCAGATAGGAGAATTCCTG-AGCCGT 1262
|||| |||||||||||||||||||||||||||||| |||||||||| |||||| | ||||
Sbjct 1189 TGACATCGAGAGGATTGGTGGAGAAGGACTTTGAGAAGATAGGAGAGTTCCTGCA-CCGT 1247
Query 1263 GCAGTGACACTGACATTGGACATCCAGAAGACA-TACGGTAAGTTGTTGAAGGACTTCAA 1321
|| |||||| | || |||||||||||| || || ||||||||| || |||||||||||||
Sbjct 1248 GCCGTGACAATCACGTTGGACATCCAGGAG-CAGTACGGTAAGGTGATGAAGGACTTCAA 1306
Query 1322 CAAGGGTTTGGTGAACAACAAAGATCTCGATCAGCTCAAGGCTGACGTCGAGAAGTTCTC 1381
||||||||||||||||||||| || ||||| || | ||||||||||| ||| ||||| |
Sbjct 1307 CAAGGGTTTGGTGAACAACAAGGAGATCGATGAGATAAAGGCTGACGTTGAGGAGTTCAC 1366
Query 1382 GGCCTCGTATGAGATGCCTGGATTCCTCATGTCTGAGATGAAGTACAAGGATTAGAGAtc 1441
| | | ||| ||||||||||| |||| |||||| | ||| | | | ||||||||||
Sbjct 1367 GTACGATTTTGATATGCCTGGATTTTTCATCTCTGAG-TCAAGGA-ACG-ATTAGAGATC 1423
Query 1442 tctctctctct 1452
|||| ||||||
Sbjct 1424 TCTCACTCTCT 1434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71786779350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5