BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947046
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13730.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfami... 2348 0.0
> AT4G13730.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily
protein | chr4:7970274-7974248 FORWARD LENGTH=1568
Length=1568
Score = 2348 bits (1271), Expect = 0.0
Identities = 1381/1433 (96%), Gaps = 12/1433 (1%)
Strand=Plus/Plus
Query 7 CAAAATCAAAATCCATGGCCAAGAAAGGTATCCCAGAGTGGCTCAACAGTTCTCTCTGGT 66
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12 CAAAATCAAAATCCATGGCCAAGAAAGGTATCCCAGAGTGGCTCAACAGTTCTCTCTGG- 70
Query 67 CTTCCGCTCCTCCTCCTCCTCTCATCGACGATCGCCACCTCCGCAATCCT-CCGGCCACT 125
| | ||||| ||||| | | |||||||||||||||||||||||||||| || ||||||
Sbjct 71 --T-C-CTCCT-CTCCT-C-C-CATCGACGATCGCCACCTCCGCAATCCTGCC-GCCACT 121
Query 126 TCCGTCACCCCTCCATCTCCTCCGATCGTCGAGCGTCCTCCTTTTTCTTCCTCTCCCTCC 185
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 TCCATCACCCCTCCATCTCCTCCGATCGTCGAGCGTCCTCCTTTTTCTTCCTCTCCCTCC 181
Query 186 GCGATTACCACCGCACCAGCTCCGACTCTTCCTGTTCGTCCTCCTTCCAAATCTGAGATT 245
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 182 GCGATTTCCACCGCACCAGCTCCTCCTCTTCCTGTTCGTCCTCCTTCCAAATCTGAGATT 241
Query 246 AACGATTTGCAGAATGGGAGTGGTAATGATGGAGCTGGAAGCGAAACTCCCGCAGCTTCT 305
|||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| ||||
Sbjct 242 AACGATTTGCAGAATGGGAGTGGTAACGATGGTGCTGGAATTGAAACTCCCGCAGTTTCT 301
Query 306 TCTGTTGAAGATGTTTCTCGAAAAGCGCAGGTCGTTGCTGAGTTATCGAAGAAGGTGATA 365
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 302 TCTGTTGAAGATGTTTCTCGAAAAGCGCAGGTCGTGGCTGAGTTATCGAAGAAGGTGATA 361
Query 366 GACTTAAAGGAATTGAGGAAAATTGCTTCACAAGGTCTACCTGATGATGCTGGAATTCGC 425
||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 362 GACTTGAAGGAATTGAGGAAGATAGCTTCACAAGGTCTACCTGATGATGCTGGAATTCGA 421
Query 426 TCCATTGTTTGGAAGCTTTTATTGGGTTATCTGTCACCGGATCGCTCTCTCTGGTCTTCT 485
|||||||||||||||||||| |||| |||| ||||||||||||||||||| |||||||||
Sbjct 422 TCCATTGTTTGGAAGCTTTTGTTGGATTATTTGTCACCGGATCGCTCTCTGTGGTCTTCT 481
Query 486 GAGTTAGCTAAGAAAAGGTCTCAGTACAAGCAATTCAAAGAGGAGCTTCTGATGAATCCT 545
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 482 GAGTTAGCTAAGAAAAGGTCTCAGTACAAGCAATTCAAAGAGGAGCTTCTGATGAACCCT 541
Query 546 TCAGAAGTAACAAGGAAAATGGATAAATCAAAGGGCGGTGATAGTAATGACCCAAAAATC 605
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 542 TCAGAAGTAACAAGGAAAATGGATAAATCAAAGGGCGGTGATAGTAATGATCCAAAAATC 601
Query 606 GAAAGCCCTGGTGCCCTTTCAAGGTCAGAGATTACTCATGAGGATCATCCCTTAAGTCTT 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 GAAAGCCCTGGTGCCCTTTCAAGGTCAGAGATTACTCATGAGGATCATCCCTTAAGTCTT 661
Query 666 GGAACAACAAGCTTGTGGAATAATTTTTTCAAGGACACAGAAGTCTTGGAACAAATAGAC 725
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 662 GGAACAACAAGCTTATGGAATAATTTTTTCAAGGACACAGAAGTTTTGGAACAAATAGAA 721
Query 726 CGCGATGTGATGCGTACTCATCCAGACATGCACTTTTTCTCTGGGGATTCAGCGGTTGCA 785
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 722 CGCGATGTGATGCGTACTCATCCAGATATGCACTTTTTCTCTGGGGATTCAGCAGTTGCA 781
Query 786 CAATCTAATCAGGATGCTTTGAAGAACATTTTGACTATTTTCGCAAAGTTGAATCCTGGC 845
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 AAATCTAATCAGGATGCTTTGAAGAACATTTTGACTATTTTCGCAAAGTTGAATCCTGGC 841
Query 846 ATCAGATATGTACAAGGGATGAATGAGATATTGGCACCTATTTTCTACATCTTTAAAAAT 905
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 842 ATCAGATATGTACAAGGGATGAATGAGATATTGGCACCTATTTTCTACATCTTCAAAAAT 901
Query 906 GACCCGGATAAAGGAAATGCTGCTTATGCTGAATCAGATGCATTTTTCTGTTTTGTTGAA 965
|||||||||||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 902 GACCCGGATAAAGGAAATGCAGCATACGCTGAATCAGATGCATTTTTCTGTTTTGTTGAA 961
Query 966 TTGATGAGTGGGTTTCGAGATAATTTCTGTCAACAACTTGATAACAGTGTTGTGGGTATA 1025
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 962 TTGATGAGTGGGTTTCGAGATAATTTCTGTCAACAACTAGATAACAGTGTTGTGGGTATA 1021
Query 1026 CGTTACACTATAACAAGACTGTCGTTGCTCCTGAAGCATCATGATGAAGAACTTTGGCGT 1085
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1022 CGTTACACTATAACAAGACTGTCGTTGCTCTTGAAGCATCATGATGAAGAACTTTGGCGT 1081
Query 1086 CATTTAGAAGTCACAACTAAAATAAACCCGCAATTCTATGCATTCAGATGGATCACACTC 1145
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 CATTTAGAAGTCACAACCAAAATAAACCCGCAATTCTATGCATTCAGATGGATCACACTC 1141
Query 1146 CTATTGACTCAAGAGTTCAATTTCGTGGAAAGCCTTCACATCTGGGACACACTCTTAAGC 1205
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 CTATTGACTCAAGAATTCAATTTCGTGGAAAGCCTTCACATCTGGGACACACTCTTAAGC 1201
Query 1206 GACCCCGAAGGTCCTCAGGAAACGCTACTGCGGATATGCTGTGCAATGTTGATTCTAGTT 1265
||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1202 GACCCGGAAGGTCCTCAGGAAACACTACTGCGGATATGCTGTGCAATGTTAATTCTAGTT 1261
Query 1266 CGAAGGCGTTTGCTTGCTGGAGATTTTACGTCGAACCTCAAACTTCTTCAGAACTATCCT 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 CGAAGGCGTTTGCTTGCTGGAGATTTTACGTCGAACCTCAAACTTCTTCAGAACTATCCT 1321
Query 1326 CCTACAAACATCAGTCATATGCTCTATGTGGCAGACAAATTACGCACTAAATAAAGATCT 1385
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1322 CCTACAAACATCAGTCACATGCTCTATGTGGCAGACAAATTACGCACTAAATAAAAATCT 1381
Query 1386 TCAGGTTAATAATATTTCACTCCCTTCTCCTTTATAAA-CTCTGCAACTTTCG 1437
||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1382 TCAGGTTAATAATATTTCACTCCCTACTCCTTTATAAAACTCTGCAACTTTCG 1434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70832968995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5