BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947053
Length=397
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13670.1 | Symbols: PTAC5 | plastid transcriptionally active... 316 8e-86
> AT4G13670.1 | Symbols: PTAC5 | plastid transcriptionally active
5 | chr4:7948579-7950903 FORWARD LENGTH=1353
Length=1353
Score = 316 bits (171), Expect = 8e-86
Identities = 278/325 (86%), Gaps = 26/325 (8%)
Strand=Plus/Plus
Query 74 CAATGCATCGCTTGGCGTCCGTGAGGATGGGATAATGACAGCAGAGCTTCTCCGGAGGTT 133
||| ||||||||||| ||||||||||||||| ||||||||||||||||||| | ||||||
Sbjct 732 CAA-GCATCGCTTGGGGTCCGTGAGGATGGGGTAATGACAGCAGAGCTTCTTCAGAGGTT 790
Query 134 GTTCATGGATGAAGACGTAGAGACATGGAGGGGCAGAGCGGTTCTGTTAGGTTGTTTACG 193
|||||||||||||||||| || | || |||| | ||| || | |
Sbjct 791 GTTCATGGATGAAGACGT--AG--A--GA----CAGA---------TAAGGATG---AAG 828
Query 194 GATGAAGCGAATAAAGAAAGAGGAAGCTGGTAATGGATCGGTATTTAGTTCAGTGACACC 253
| | | | ||| ||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 829 CAAGTA-C-AATGAAGAAAGAGGAAGCTGGTAATGGGGCGGTATTTACTTCAGTGACACA 886
Query 254 AGTCCCTGAGAAGAAGCAATCAATCATAAAAGATCAAAGTGACAGAGAAGTCGACGTTAC 313
||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||
Sbjct 887 AGTCCCTGAGAAGAAGCAATCAATCGTGAAAGATCAAAGTGACAGAGAAGTTGACGTTAC 946
Query 314 TCAAAATAGTGTTTTTCTTCTTGGAGAAAACAGATGGGAAGATCCCTCCAGGCTCATTGG 373
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 TCAAAATCGGGTTTTTCTTCTTGGAGAAAACAGATGGGAAGATCCCTCCAGGCTCATTGG 1006
Query 374 -ATGAACAAACCGGTAGACAGAAGT 397
| ||||||||||||||||||||||
Sbjct 1007 CAGGAACAAACCGGTAGACAGAAGT 1031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18749870377
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5