BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947070
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13590.1 | Symbols: | Uncharacterized protein family (UPF00... 1812 0.0
> AT4G13590.1 | Symbols: | Uncharacterized protein family (UPF0016)
| chr4:7901216-7903961 REVERSE LENGTH=1402
Length=1402
Score = 1812 bits (981), Expect = 0.0
Identities = 1079/1127 (96%), Gaps = 4/1127 (0%)
Strand=Plus/Plus
Query 1 GTGAATTCAGAACT-AAAAGATCATGAACCTCACAAGCTTGAGCAAGAATGCTAATTCCA 59
|||||||| ||| | ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 148 GTGAATTCTGAA-TAAAAAGATCATGAAGCTCACAAGCTTGAGCAAGAATGCTAATTCCA 206
Query 60 CAGCAACATCAGTAACTGTATCTTCAATACAGAAGCTCCCGTTTCTGTCTCTGTCTGAAT 119
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 207 CAGCAACAGCAGTAACTGTATCTTCAATACAGAAACTCCCGTTTCTGTCTCTGTCTGAAA 266
Query 120 CTTTACCTTGTCCGAAGATTTCGACAAACCCCAATTTTCTTCCTTTAAGATGTAGACGGA 179
|||| ||||||||||||| ||||| ||| |||| |||||||||||||||||||||||||
Sbjct 267 CTTTGCCTTGTCCGAAGAGTTCGAGAAAACCCACGTTTCTTCCTTTAAGATGTAGACGGA 326
Query 180 GACCAAAGTTGGATTTGCTCTGGGGAAAATTTAGAGTTCGTGCATCAGATGCTGGTGTTG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 GACCAAAGTTGGATTTGCTCTGGGGAAAATTTAGAGTTCGTGCATCAGATGCTGGTGTTG 386
Query 240 GATCTGGGAGCTATAGTGGTGGAGAAGAAGATGGATCTCAAAGTAGTTCTCTTCATCAAT 299
|||||||||| ||||||||||||||||| ||||||||||| |||||||||||| |||| |
Sbjct 387 GATCTGGGAGTTATAGTGGTGGAGAAGAGGATGGATCTCAGAGTAGTTCTCTTGATCAGT 446
Query 300 CTCCTACCACTTCATCAGAAAGCTTAAAACCTCGAGGACCATTTCCTTATTCTTTGTCAA 359
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 447 CTCCTGCCACTTCATCAGAAAGCTTAAAACCTCGAGGGCCATTTCCTTATTCTTTGTCAA 506
Query 360 TAGCGCTTGTACTACTGAGTTGCGGTTTGGTATTTTCTCTAATCACTTTTGTGAAAGGAG 419
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 507 TAGCGCTTGTACTACTGAGTTGTGGTTTGGTATTTTCTCTTATCACTTTTGTGAAAGGAG 566
Query 420 GACCATCTTCAGTTCTAGCAGCAGTAGCAAAGTCAGGTTTCACAGCAGCCTTTTCACTGA 479
|||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 567 GACCATCTTCAGTTTTAGCAGCAGTAGCAAAGTCAGGCTTCACAGCAGCCTTCTCACTCA 626
Query 480 TATTTGTTTCTGAGATTGGAGATAAGACATTTTTCATTGCTGCTTTGTTGGCCATGCAGT 539
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 627 TATTTGTTTCTGAGATTGGAGACAAGACATTTTTCATTGCTGCTTTGTTGGCCATGCAGT 686
Query 540 ATGAGAAAACACTGGTCCTTTTAGGTTCAATGGGAGCTTTATCTTTAATGACTATCTTAT 599
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 687 ATGAGAAAACACTGGTCCTTTTAGGTTCAATGGGGGCTTTATCTTTGATGACTATCTTAT 746
Query 600 CAGTTGTTATTGGGAAGATATTTCAGTCCGTGCCTGCTCAATTCCAGACGACACTACCGA 659
||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 747 CAGTTGTTATTGGGAAGATATTTCAATCCGTGCCTGCTCAGTTCCAAACGACACTACCGA 806
Query 660 TAGGAGAATATGCTGCGATTGCGCTTCTCATGTTCTTTGGATTGAAATCCATTAAGGATG 719
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 807 TAGGAGAATATGCTGCAATTGCGCTTCTCATGTTTTTTGGATTGAAATCCATTAAAGATG 866
Query 720 CATGGGATCTTCCACCGGTGGAAGCCAAGAATGGTGAGGAAACTGGTATAGAACTTGGTG 779
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 CATGGGATCTTCCACCAGTGGAAGCCAAGAATGGTGAGGAAACTGGTATAGAACTTGGTG 926
Query 780 AATACTCTGAAGCTGAGGAGCTCGTGAAAGAAAAGGCGTCTAAAAAGCTCACAAACCCAC 839
||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 927 AATACTCCGAAGCTGAGGAACTCGTGAAAGAAAAGGCGTCCAAAAAGCTCACAAACCCAC 986
Query 840 TTGAAATCCTCTGGAAATCATTCAGCCTCGTGTTCTTTGCGGAATGGGGAGACCGATCAA 899
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 987 TTGAAATCCTCTGGAAGTCATTCAGCCTCGTGTTCTTTGCGGAATGGGGAGATCGATCAA 1046
Query 900 TGCTTGCTACTGTTGCGCTTGGTGCTGCACAGTCTCCATTGGGAGTTGCGAGCGGCGCTA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1047 TGCTTGCTACTGTTGCGCTTGGTGCTGCACAGTCTCCATTGGGAGTTGCGAGCGGAGCTA 1106
Query 960 TTGCTGGACACTTAGTTGCAACAGTGCTTGCAATCATGGGTGGCGCGTTCCTTGCCAACT 1019
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1107 TTGCTGGACACTTAGTAGCAACAGTGCTTGCAATCATGGGCGGCGCGTTCCTTGCCAACT 1166
Query 1020 ATATATCTGAGAAACTGGTGGGCTATGT-GGGTGGAGCTCTCTTCTTAGTTTTTGCTGCA 1078
|||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1167 ATATCTCTGAGAAACTGGTGGGCTATGTTGGG-GGAGCTCTCTTCTTAGTTTTTGCTGCA 1225
Query 1079 GCCACATTCTTTGGAGTGTTCTAAGCTGAGTGAACGGTGTTTGTTCC 1125
|||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1226 GCCACATTCTTTGGAGTGTTCTGAGCTGAGTGAACGGTGTTTGTTCC 1272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55170398955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5