BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947071
Length=778
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13580.1 | Symbols: | Disease resistance-responsive (dirige... 1190 0.0
AT3G24020.1 | Symbols: | Disease resistance-responsive (dirige... 638 0.0
> AT4G13580.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr4:7900374-7901328 FORWARD
LENGTH=955
Length=955
Score = 1190 bits (644), Expect = 0.0
Identities = 732/776 (94%), Gaps = 0/776 (0%)
Strand=Plus/Plus
Query 3 CAAAACAAATATCCTCCAATATGATGAAACAATCACCATCCTCACTTTCAACATCAATCT 62
|||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 34 CAAAACAAGCATCCTCCAATATGATGAAACAATCACCATTCTCACTTTTAACATCAATCT 93
Query 63 TTCTCATAGTTGCTCTATTTACTGCAACAACTGCACTCGATCCTGCGCCCGAAGACCCGA 122
||||||||| |||||| ||||||||||| || |||||||||||||| |||||||||||||
Sbjct 94 TTCTCATAGCTGCTCTTTTTACTGCAACTACCGCACTCGATCCTGCACCCGAAGACCCGA 153
Query 123 TTTTCGAATTGTACATGCACGACATACTTGGCGGAAGTAGTCCCACCGCGAGACCAATTA 182
|||| ||||||||||||||||| |||||||| ||||| |||||||| || ||||| ||||
Sbjct 154 TTTTTGAATTGTACATGCACGATATACTTGGGGGAAGCAGTCCCACAGCAAGACCCATTA 213
Query 183 CTGGTTTGCTTGGAAACATCTACAACGGTCAAGTACCGTTTGCTAAGCAGATCGGTTTTG 242
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 CGGGTTTGCTTGGAAACATCTACAACGGTCAAGTACCGTTTGCTAAGCAGATCGGTTTTG 273
Query 243 TTCCACCGCAAAACGGTGTTGCCATACCCAATGCAAATGGGGCTTTGCCAACGGTTAATG 302
||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| |
Sbjct 274 TTCCACCGCAAAACGGTGTAGCCATACCCAACGCAAATGGGGCAATGCCAACGGTTAACG 333
Query 303 GTATCAACGGTATTCCTTTAGGTACCGGTTTGTCCGGTACTGCGTTTTCTGGTCAGAATC 362
|||||||||||||||| |||||||| |||||||| || || |||||||||||||||||||
Sbjct 334 GTATCAACGGTATTCCATTAGGTACTGGTTTGTCTGGAACAGCGTTTTCTGGTCAGAATC 393
Query 363 TAAATGGGATTCAGACACAGTTGGGTCCTGATGGTCTGAGTCTTGGGTTTGGAACAATCA 422
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 TAAATGGGATTCAGACTCAGTTGGGTCCTGATGGTCTGAGTCTTGGGTTTGGAACAATCA 453
Query 423 CGGTGATTGATGACATAATCACATCTGGTCCTGACTTGGGGTCACAGCCACTTGGTAAGG 482
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 454 CGGTGATTGACGACATAATCACATCTGGTCCTGACTTGGGGTCACAACCACTTGGTAAGG 513
Query 483 CTCAAGGGGTTTATGTTGCCAGCTCAGCAGATGGAAGCACTCAGATGATGGCTTTCACAG 542
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 514 CTCAAGGTGTTTATGTTGCCAGCTCAGCAGATGGAAGCACGCAGATGATGGCTTTCACAG 573
Query 543 CTATGCTTGAAGGTGGCGAGTACAATGATAATCTAAATTTCTATGGAATTTATAGGATCG 602
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 574 CTATGCTTGAAGGTGGAGAGTACAATGATAATCTAAATTTCTATGGAATCTATAGGATAG 633
Query 603 GAAGCGCCATGTCGCATCTGTCTGTTACTGGAGGAACAGGAAGGTTTAAGAATGCTTGCG 662
||||||||||||| |||||||| || ||||||||||| |||||||||||||| |||||||
Sbjct 634 GAAGCGCCATGTCACATCTGTCAGTGACTGGAGGAACCGGAAGGTTTAAGAACGCTTGCG 693
Query 663 GATTTGCAGAGGTTAGGCCGTTGATTCCTGCGGGCCAACACTTTGTTGATGGAGCAGAAA 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 694 GATTTGCAGAGGTTAGGCCGTTGATTCCTGCGGGCCAACACTTTGTTGATGGAGCTGAGA 753
Query 723 TGTTGTTGAGGATCATTGTCCATCTGAAATATTGAGAATTATGTTTAAAACTTGTG 778
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 754 TGCTGTTGAGGATCATTGTCCATCTGAAATACTGAGAATTATGTTTAAAACTTGTG 809
> AT3G24020.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr3:8678738-8679656 FORWARD
LENGTH=919
Length=919
Score = 638 bits (345), Expect = 0.0
Identities = 614/743 (83%), Gaps = 22/743 (3%)
Strand=Plus/Plus
Query 16 CTCCAAT-ATGATGAAACAATCACCATCCTCACTTTCAACATCAATCTT-TCTCATAGTT 73
|||| || ||||| || |||||||||| || |||| |||| ||||||| | ||| |||
Sbjct 86 CTCC-ATGATGATCAAGCAATCACCATTCTTGCTTTTAACAACAATCTTGT-TCACGGTT 143
Query 74 GCTCTATTTACTGCAACAACTGCACTCGATCCTGCGCCCGAAGACCCGATTTTCGAATTG 133
||| | || || | | | || || |||||||| || |||||||| ||||||||| |
Sbjct 144 GCTGT-GTT--TGTAGC-A--GCGCTTGATCCTGCACCTGAAGACCCCATTTTCGAACTC 197
Query 134 TACATGCACGACATACTTGGCGGAAGTAGTCCCACCGCGAGACCAATTACTGGTTTGCTT 193
||||||||||| ||||||| ||||| || ||||||||||| || || || ||||||||
Sbjct 198 TACATGCACGATTTACTTGGAGGAAGCAGCCCCACCGCGAGGCCCATCACGGGTTTGCTC 257
Query 194 GGAAACATCTACAACGGTCAAGTACCGTTTGCTAAGCAGATCGGTTTTGTTCCACC-GCA 252
|| ||||| |||||||||||||| || |||||||||||||| ||||| ||| || | |
Sbjct 258 GGGAACATTTACAACGGTCAAGTTCCATTTGCTAAGCAGATTGGTTTCACTCCTCCTG-A 316
Query 253 AAACGGTGTTGCCATACCCAATGCAAATGGGGCTTTGCCAACGGTTAATGGTATCAACGG 312
|||||| | ||||||||||||||||| || || | ||||||||||| || ||||| ||
Sbjct 317 GAACGGTATAGCCATACCCAATGCAAACGGCGCACTACCAACGGTTAACGGCATCAATGG 376
Query 313 TATTCCT-TTAGGTACCGGTTTGTCCGGTACTGCGTTTTCTGGTCAGAATCTAAATGGGA 371
| | ||| || || ||||| ||||| ||||| || | ||||||||||| ||||| || |
Sbjct 377 TGTACCTCTT-GGGACCGGCTTGTCTGGTACAGCATACTCTGGTCAGAACCTAAACGGAA 435
Query 372 TTCAGACACAGTTGGGTCCTGATGGTCTGAGTCTTGGGTTTGGAACAATCACGGTGATTG 431
||||||| |||||||||||||||||||| ||||| |||||||| || || || ||||| |
Sbjct 436 TTCAGACTCAGTTGGGTCCTGATGGTCTCAGTCTCGGGTTTGGTACCATTACTGTGATCG 495
Query 432 ATGACATAATCACATCTGGTCCTGACTTGGGGTCACAGCCACTTGGTAAGGCTCAAGGGG 491
| || ||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 496 ACGATATACTCACATCTGGTCCTGACTTGGGTTCACAGCCACTTGGTAAGGCTCAAGGAG 555
Query 492 TTTATGTTGCCAGCTCAGCAGATGGAAGCACTCAGATGATGGCTTTCACAGCTATGCTTG 551
|||||||||| || || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 556 TTTATGTTGCAAGTTCTGCAGATGGAAGCACACAGATGATGGCTTTCACAGCTATGCTTG 615
Query 552 AAGGTGGCGAGTACAATGATAATCTAAATTTCTATGGAATTTATAGGATCGGAAGCGCCA 611
|||| || |||||||| || || || || ||||| |||||||| ||||||||||||||||
Sbjct 616 AAGGAGGAGAGTACAACGACAACCTTAACTTCTACGGAATTTACAGGATCGGAAGCGCCA 675
Query 612 TGTCGCATCTGTCTGTTACTGGAGGAACAGGAAGGTTTAAGAATGCTTGCGGATTTGCAG 671
|||||||||| || || |||||||||||||| ||||| ||||| ||||| || |||||||
Sbjct 676 TGTCGCATCTATCAGTGACTGGAGGAACAGGTAGGTTCAAGAACGCTTGTGGGTTTGCAG 735
Query 672 AGGTTAGGCCGTTGATTCC-TGCGGGCCAACACTTT-GTTGATGGAGCAGAAATGTT-G- 727
|||| || || |||||||| | | || || || | || ||||||||||| | || |
Sbjct 736 AGGTCAGACCATTGATTCCAT-CAGGTCAGCA-TGAAGTGGATGGAGCAGAG-TCTTTGC 792
Query 728 TTGAGGATCATTGTCCATCTGAA 750
|| ||||||||||||||||||||
Sbjct 793 TT-AGGATCATTGTCCATCTGAA 814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37826312691
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5