BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947092

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G04408.1 | Symbols:  | pseudogene, similar to Putative histo...   329    1e-89
  AT4G13570.2 | Symbols: HTA4 | histone H2A 4 | chr4:7884516-7885...   322    2e-87


> AT4G04408.1 | Symbols:  | pseudogene, similar to Putative histone 
H2A, blastp match of 79% identity and 3.0e-31 P-value to 
GP|22773254|gb|AAN06860.1||AC105729 Putative histone H2A {Oryza 
sativa (japonica cultivar-group)} | chr4:2184059-2184400 
REVERSE LENGTH=342
Length=342

 Score =  329 bits (178),  Expect = 1e-89
 Identities = 250/284 (88%), Gaps = 8/284 (3%)
 Strand=Plus/Plus

Query  273  TTTCCAGTGGGTCGTATTCACAGGCAACTCAAGACCATAGTTTCTGCACATGGTAGAGTT  332
            |||||||||| ||||||||||| |||||| ||||||| |||||||||||||||||  |||
Sbjct  61   TTTCCAGTGGCTCGTATTCACAAGCAACTTAAGACCAGAGTTTCTGCACATGGTACTGTT  120

Query  333  GGTGCCAATGCTGATGTCTACACGGCTTCAATCCTTGAATACCT-A--A---AGGTTCTT  386
            ||||| | || || |||||||||| ||||||||||||||| ||| |  |   ||||||||
Sbjct  121  GGTGCGACTGATGTTGTCTACACGACTTCAATCCTTGAATGCCTAACTACTGAGGTTCTT  180

Query  387  GAGTTGGCTGGAAACGCGAGCAAAGATCTGAAAGTGAAGAGGATAACTCCATGGCATTTG  446
             ||||||| | |||| | | ||| ||| ||||||||||||||||||||||| ||||||||
Sbjct  181  CAGTTGGCCGAAAACACTAACAAGGATTTGAAAGTGAAGAGGATAACTCCAAGGCATTTG  240

Query  447  CAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGCTGGA  506
            ||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  241  CAGTTGGCGGTTAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGTTGGA  300

Query  507  GGAGGTGTGATCCCTCACACCCACTAGTCTCTCATCAGCAAAAC  550
            ||||||||||||||||||| |||||||||||  |||| ||||||
Sbjct  301  GGAGGTGTGATCCCTCACATCCACTAGTCTC--ATCAACAAAAC  342


> AT4G13570.2 | Symbols: HTA4 | histone H2A 4 | chr4:7884516-7885982 
FORWARD LENGTH=759
Length=759

 Score =  322 bits (174),  Expect = 2e-87
 Identities = 250/286 (87%), Gaps = 8/286 (3%)
 Strand=Plus/Plus

Query  271  GATTTCCAGTGGGTCGTATTCACAGGCAACTCAAGACCATAGTTTCTGCACATGGTAGAG  330
            |||||| ||||| ||||||||||| |||||| |||| || ||||||||||||| |||| |
Sbjct  173  GATTTCAAGTGGCTCGTATTCACAAGCAACTTAAGAACAGAGTTTCTGCACATAGTAGTG  232

Query  331  TTGGTGCCAATGCTGATGTCTACACGGCTTCAATCCTTGAATA-C---CTA-A-AGGTTC  384
            ||||||| | || || |||||||| | |||||||||||||||| |   ||| | ||||||
Sbjct  233  TTGGTGCGACTGATGTTGTCTACATGACTTCAATCCTTGAATACCTAACTACAGAGGTTC  292

Query  385  TTGAGTTGGCTGGAAACGCGAGCAAAGATCTGAAAGTGAAGAGGATAACTCCATGGCATT  444
            || ||||||| | |||| | ||||||||| | ||||||||||||||||||||| ||||||
Sbjct  293  TTCAGTTGGCCGAAAACACTAGCAAAGATTTAAAAGTGAAGAGGATAACTCCAAGGCATT  352

Query  445  TGCAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGCTG  504
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||
Sbjct  353  TGCAGTTGGCGATCAGAGGAGATGAAGAGCTTGACACACTCATCAAAGGAACAATTATTG  412

Query  505  GAGGAGGTGTGATCCCTCACACCCACTAGTCTCTCATCAGCAAAAC  550
            ||||| ||||||||||||||| |||||||||||  |||| ||||||
Sbjct  413  GAGGAAGTGTGATCCCTCACATCCACTAGTCTC--ATCAACAAAAC  456


 Score =  195 bits (105),  Expect = 5e-49
 Identities = 139/155 (90%), Gaps = 4/155 (3%)
 Strand=Plus/Plus

Query  120  AGCAAAGATCTGAAAGTGAAGAGGATTACTCCAAGGCATTTGCAGTTGGCGATCAGAGGA  179
            ||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  313  AGCAAAGATTTAAAAGTGAAGAGGATAACTCCAAGGCATTTGCAGTTGGCGATCAGAGGA  372

Query  180  GATGAGGAGCTTGTGACACTCATCAAAGGAACAATTGCTGGAGGAGGTGT-ACTGCCTCA  238
            ||||| |||||||  |||||||||||||||||||||  ||||||| |||| | | |||||
Sbjct  373  GATGAAGAGCTTGACACACTCATCAAAGGAACAATTATTGGAGGAAGTGTGA-TCCCTCA  431

Query  239  CATCCAC-ATGTCTCATCAACAAACCCACCAAGGA  272
            ||||||| | |||||||||||||| | ||||||||
Sbjct  432  CATCCACTA-GTCTCATCAACAAAACAACCAAGGA  465



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26523629616


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5