BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947096

Length=379
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G59240.1 | Symbols:  | RNI-like superfamily protein | chr3:2...   100    8e-21


> AT3G59240.1 | Symbols:  | RNI-like superfamily protein | chr3:21898682-21900364 
REVERSE LENGTH=1515
Length=1515

 Score =  100 bits (54),  Expect = 8e-21
 Identities = 129/165 (78%), Gaps = 6/165 (4%)
 Strand=Plus/Plus

Query  205   TTCGTAATTGTCTATTATCAAGTCCGGTGAAGGTTCTGAAGATATTTAAGTTTGGTGAAA  264
             |||||| ||| |||| |||||||||||||||||||||||||||| | |||||||| ||| 
Sbjct  1130  TTCGTAGTTGCCTATCATCAAGTCCGGTGAAGGTTCTGAAGATACTCAAGTTTGGCGAAG  1189

Query  265   TTTG-TGATGACGATGAAAACATAG-AGGAGCAGATCGAGC-AGGTCAAGCACTTCCTAA  321
             || | |  | ||  ||   ||  || |  ||||| | |||  || ||||| | |||||  
Sbjct  1190  TT-GCTTCTTACTTTGGTGACG-AGGAAAAGCAGCTGGAGTTAG-TCAAGTATTTCCTGG  1246

Query  322   AGACAACGCCGAATCTTGAACAAATGATATTGTGCTAGGATACAC  366
             |||||| |||||||||||||||||||||||||  |||  ||||||
Sbjct  1247  AGACAATGCCGAATCTTGAACAAATGATATTGCACTACAATACAC  1291



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17845050895


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5