BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947103

Length=568
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G13570.2 | Symbols: HTA4 | histone H2A 4 | chr4:7884516-7885...   361    5e-99
  AT4G04408.1 | Symbols:  | pseudogene, similar to Putative histo...   351    3e-96
  AT3G54560.1 | Symbols: HTA11 | histone H2A 11 | chr3:20196266-2...   219    3e-56


> AT4G13570.2 | Symbols: HTA4 | histone H2A 4 | chr4:7884516-7885982 
FORWARD LENGTH=759
Length=759

 Score =  361 bits (195),  Expect = 5e-99
 Identities = 256/286 (90%), Gaps = 2/286 (1%)
 Strand=Plus/Plus

Query  280  GATTTCCAGTGGGTCGTATTCACAGGCAACTCAAGACCATAGTTTCTGCACATGGTAGAG  339
            |||||| ||||| ||||||||||| |||||| |||| || ||||||||||||| |||| |
Sbjct  173  GATTTCAAGTGGCTCGTATTCACAAGCAACTTAAGAACAGAGTTTCTGCACATAGTAGTG  232

Query  340  TTGGTGCCACTGCTGATGTCTACACGGCTTCAATCCTTGAATACCTAACTACAAAGGTTC  399
            ||||||| |||| || |||||||| | |||||||||||||||||||||||||| ||||||
Sbjct  233  TTGGTGCGACTGATGTTGTCTACATGACTTCAATCCTTGAATACCTAACTACAGAGGTTC  292

Query  400  TTGAGTTGGCTGGAAACGCGAGCAAAGATCTAAAAGTGAAGAGGATAACTCCATGGCATT  459
            || ||||||| | |||| | ||||||||| ||||||||||||||||||||||| ||||||
Sbjct  293  TTCAGTTGGCCGAAAACACTAGCAAAGATTTAAAAGTGAAGAGGATAACTCCAAGGCATT  352

Query  460  TGCAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGAAACAATTGCTG  519
            ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||  ||
Sbjct  353  TGCAGTTGGCGATCAGAGGAGATGAAGAGCTTGACACACTCATCAAAGGAACAATTATTG  412

Query  520  GAGGAGGTGTGATCCCTCACACCCACTAGTCTCTCATCAGCAAAAC  565
            ||||| ||||||||||||||| |||||||||||  |||| ||||||
Sbjct  413  GAGGAAGTGTGATCCCTCACATCCACTAGTCTC--ATCAACAAAAC  456


> AT4G04408.1 | Symbols:  | pseudogene, similar to Putative histone 
H2A, blastp match of 79% identity and 3.0e-31 P-value to 
GP|22773254|gb|AAN06860.1||AC105729 Putative histone H2A {Oryza 
sativa (japonica cultivar-group)} | chr4:2184059-2184400 
REVERSE LENGTH=342
Length=342

 Score =  351 bits (190),  Expect = 3e-96
 Identities = 253/284 (89%), Gaps = 2/284 (1%)
 Strand=Plus/Plus

Query  282  TTTCCAGTGGGTCGTATTCACAGGCAACTCAAGACCATAGTTTCTGCACATGGTAGAGTT  341
            |||||||||| ||||||||||| |||||| ||||||| |||||||||||||||||  |||
Sbjct  61   TTTCCAGTGGCTCGTATTCACAAGCAACTTAAGACCAGAGTTTCTGCACATGGTACTGTT  120

Query  342  GGTGCCACTGCTGATGTCTACACGGCTTCAATCCTTGAATACCTAACTACAAAGGTTCTT  401
            ||||| |||| || |||||||||| ||||||||||||||| |||||||||  ||||||||
Sbjct  121  GGTGCGACTGATGTTGTCTACACGACTTCAATCCTTGAATGCCTAACTACTGAGGTTCTT  180

Query  402  GAGTTGGCTGGAAACGCGAGCAAAGATCTAAAAGTGAAGAGGATAACTCCATGGCATTTG  461
             ||||||| | |||| | | ||| ||| | ||||||||||||||||||||| ||||||||
Sbjct  181  CAGTTGGCCGAAAACACTAACAAGGATTTGAAAGTGAAGAGGATAACTCCAAGGCATTTG  240

Query  462  CAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGAAACAATTGCTGGA  521
            ||||||||| | |||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct  241  CAGTTGGCGGTTAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGTTGGA  300

Query  522  GGAGGTGTGATCCCTCACACCCACTAGTCTCTCATCAGCAAAAC  565
            ||||||||||||||||||| |||||||||||  |||| ||||||
Sbjct  301  GGAGGTGTGATCCCTCACATCCACTAGTCTC--ATCAACAAAAC  342


> AT3G54560.1 | Symbols: HTA11 | histone H2A 11 | chr3:20196266-20197650 
FORWARD LENGTH=689
Length=689

 Score =  219 bits (118),  Expect = 3e-56
 Identities = 164/186 (88%), Gaps = 4/186 (2%)
 Strand=Plus/Plus

Query  99   GCAGAAGTTCTTGAGTTAGCTGGAAATGTGAGCAAAGATCTGAAAGTGAAGAGGATTACT  158
            ||||| ||||||||||| ||||| |||| |||||| ||||| |||||||||||||| || 
Sbjct  317  GCAGAGGTTCTTGAGTTGGCTGGGAATGCGAGCAAGGATCTCAAAGTGAAGAGGATAACG  376

Query  159  CCAAGGCATTTGCAGTTGGCGATTAGAGGAGATGAGGAGCTTGTGACACTCATCAAAGGA  218
            ||||||||| ||||||||||||||||||||||||||||||| |  ||||||||||| |||
Sbjct  377  CCAAGGCATCTGCAGTTGGCGATTAGAGGAGATGAGGAGCTGGACACACTCATCAAGGGA  436

Query  219  ACAATTGCTGGAGGAGGTGT-ACTGCCTCACATCCACATGTCTC--ATCAACAAACCCAC  275
            || ||||||||||| ||||| | | ||||||||||||| |||||  ||||||||| ||||
Sbjct  437  ACGATTGCTGGAGGTGGTGTGA-TCCCTCACATCCACAAGTCTCTCATCAACAAAACCAC  495

Query  276  CAAGGA  281
            ||||||
Sbjct  496  CAAGGA  501



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27277141821


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5