BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg947103 Length=568 Score E Sequences producing significant alignments: (Bits) Value AT4G13570.2 | Symbols: HTA4 | histone H2A 4 | chr4:7884516-7885... 361 5e-99 AT4G04408.1 | Symbols: | pseudogene, similar to Putative histo... 351 3e-96 AT3G54560.1 | Symbols: HTA11 | histone H2A 11 | chr3:20196266-2... 219 3e-56 > AT4G13570.2 | Symbols: HTA4 | histone H2A 4 | chr4:7884516-7885982 FORWARD LENGTH=759 Length=759 Score = 361 bits (195), Expect = 5e-99 Identities = 256/286 (90%), Gaps = 2/286 (1%) Strand=Plus/Plus Query 280 GATTTCCAGTGGGTCGTATTCACAGGCAACTCAAGACCATAGTTTCTGCACATGGTAGAG 339 |||||| ||||| ||||||||||| |||||| |||| || ||||||||||||| |||| | Sbjct 173 GATTTCAAGTGGCTCGTATTCACAAGCAACTTAAGAACAGAGTTTCTGCACATAGTAGTG 232 Query 340 TTGGTGCCACTGCTGATGTCTACACGGCTTCAATCCTTGAATACCTAACTACAAAGGTTC 399 ||||||| |||| || |||||||| | |||||||||||||||||||||||||| |||||| Sbjct 233 TTGGTGCGACTGATGTTGTCTACATGACTTCAATCCTTGAATACCTAACTACAGAGGTTC 292 Query 400 TTGAGTTGGCTGGAAACGCGAGCAAAGATCTAAAAGTGAAGAGGATAACTCCATGGCATT 459 || ||||||| | |||| | ||||||||| ||||||||||||||||||||||| |||||| Sbjct 293 TTCAGTTGGCCGAAAACACTAGCAAAGATTTAAAAGTGAAGAGGATAACTCCAAGGCATT 352 Query 460 TGCAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGAAACAATTGCTG 519 ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| || Sbjct 353 TGCAGTTGGCGATCAGAGGAGATGAAGAGCTTGACACACTCATCAAAGGAACAATTATTG 412 Query 520 GAGGAGGTGTGATCCCTCACACCCACTAGTCTCTCATCAGCAAAAC 565 ||||| ||||||||||||||| ||||||||||| |||| |||||| Sbjct 413 GAGGAAGTGTGATCCCTCACATCCACTAGTCTC--ATCAACAAAAC 456 > AT4G04408.1 | Symbols: | pseudogene, similar to Putative histone H2A, blastp match of 79% identity and 3.0e-31 P-value to GP|22773254|gb|AAN06860.1||AC105729 Putative histone H2A {Oryza sativa (japonica cultivar-group)} | chr4:2184059-2184400 REVERSE LENGTH=342 Length=342 Score = 351 bits (190), Expect = 3e-96 Identities = 253/284 (89%), Gaps = 2/284 (1%) Strand=Plus/Plus Query 282 TTTCCAGTGGGTCGTATTCACAGGCAACTCAAGACCATAGTTTCTGCACATGGTAGAGTT 341 |||||||||| ||||||||||| |||||| ||||||| ||||||||||||||||| ||| Sbjct 61 TTTCCAGTGGCTCGTATTCACAAGCAACTTAAGACCAGAGTTTCTGCACATGGTACTGTT 120 Query 342 GGTGCCACTGCTGATGTCTACACGGCTTCAATCCTTGAATACCTAACTACAAAGGTTCTT 401 ||||| |||| || |||||||||| ||||||||||||||| ||||||||| |||||||| Sbjct 121 GGTGCGACTGATGTTGTCTACACGACTTCAATCCTTGAATGCCTAACTACTGAGGTTCTT 180 Query 402 GAGTTGGCTGGAAACGCGAGCAAAGATCTAAAAGTGAAGAGGATAACTCCATGGCATTTG 461 ||||||| | |||| | | ||| ||| | ||||||||||||||||||||| |||||||| Sbjct 181 CAGTTGGCCGAAAACACTAACAAGGATTTGAAAGTGAAGAGGATAACTCCAAGGCATTTG 240 Query 462 CAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGAAACAATTGCTGGA 521 ||||||||| | |||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 241 CAGTTGGCGGTTAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGTTGGA 300 Query 522 GGAGGTGTGATCCCTCACACCCACTAGTCTCTCATCAGCAAAAC 565 ||||||||||||||||||| ||||||||||| |||| |||||| Sbjct 301 GGAGGTGTGATCCCTCACATCCACTAGTCTC--ATCAACAAAAC 342 > AT3G54560.1 | Symbols: HTA11 | histone H2A 11 | chr3:20196266-20197650 FORWARD LENGTH=689 Length=689 Score = 219 bits (118), Expect = 3e-56 Identities = 164/186 (88%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 99 GCAGAAGTTCTTGAGTTAGCTGGAAATGTGAGCAAAGATCTGAAAGTGAAGAGGATTACT 158 ||||| ||||||||||| ||||| |||| |||||| ||||| |||||||||||||| || Sbjct 317 GCAGAGGTTCTTGAGTTGGCTGGGAATGCGAGCAAGGATCTCAAAGTGAAGAGGATAACG 376 Query 159 CCAAGGCATTTGCAGTTGGCGATTAGAGGAGATGAGGAGCTTGTGACACTCATCAAAGGA 218 ||||||||| ||||||||||||||||||||||||||||||| | ||||||||||| ||| Sbjct 377 CCAAGGCATCTGCAGTTGGCGATTAGAGGAGATGAGGAGCTGGACACACTCATCAAGGGA 436 Query 219 ACAATTGCTGGAGGAGGTGT-ACTGCCTCACATCCACATGTCTC--ATCAACAAACCCAC 275 || ||||||||||| ||||| | | ||||||||||||| ||||| ||||||||| |||| Sbjct 437 ACGATTGCTGGAGGTGGTGTGA-TCCCTCACATCCACAAGTCTCTCATCAACAAAACCAC 495 Query 276 CAAGGA 281 |||||| Sbjct 496 CAAGGA 501 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27277141821 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5