BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947105

Length=248
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G10320.1 | Symbols:  | unknown protein; Has 54 Blast hits to...   196    6e-50


> AT5G10320.1 | Symbols:  | unknown protein; Has 54 Blast hits 
to 53 proteins in 19 species: Archae - 0; Bacteria - 4; Metazoa 
- 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr5:3243956-3246720 REVERSE 
LENGTH=1553
Length=1553

 Score =  196 bits (106),  Expect = 6e-50
 Identities = 135/148 (91%), Gaps = 6/148 (4%)
 Strand=Plus/Plus

Query  58   GCTGAATCACGAGTTTTGTTTGACACTAACCCGTTGAAGCCGCTTGGAGATCTGCTTGAA  117
            ||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct  715  GCTGAATCACGAGTTCTGTTTGAAACTAATCCGTTGAAGCCGCTTGGAGATCTGCTTGAA  774

Query  118  CGTGAGGGCCTTTTGACACAAAGTATTAGAATACAACAAGAGTTTAAGTCGGGTGAAGAG  177
            ||||||| |||||||  || ||  |  ||| |||||||||||||||| ||||||||||||
Sbjct  775  CGTGAGGCCCTTTTG--AC-AA--A-CAGAGTACAACAAGAGTTTAATTCGGGTGAAGAG  828

Query  178  TATTGGGCGTTAGAAAGAAAGCTTTGTC  205
            ||||||||||||||||||||||||||||
Sbjct  829  TATTGGGCGTTAGAAAGAAAGCTTTGTC  856



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11259975776


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5