BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg947108 Length=492 Score E Sequences producing significant alignments: (Bits) Value AT5G35600.1 | Symbols: HDA7 | histone deacetylase7 | chr5:13770... 536 7e-152 > AT5G35600.1 | Symbols: HDA7 | histone deacetylase7 | chr5:13770121-13771712 REVERSE LENGTH=1230 Length=1230 Score = 536 bits (290), Expect = 7e-152 Identities = 369/407 (91%), Gaps = 6/407 (1%) Strand=Plus/Plus Query 46 ATGTGGACTT-GGACGGTCCTGTCTTCCATAACCTCTTCGATTATTGTCGTGCTTACGCT 104 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 305 ATGTGGA-TTGGGACGGTCCTGTCTTCCATAACCTCTTCGATTATTGTCGTGCTTACGCT 363 Query 105 GGTGGTACTATTAGCGCCGCCGCTAAATTGAACCGTCAAGAAGCAGATATTGCTATCAAT 164 |||||| |||||||||||||||| |||||||||||||||||||| |||||||| || || Sbjct 364 GGTGGTTCTATTAGCGCCGCCGCGAAATTGAACCGTCAAGAAGCCGATATTGCCATAAAC 423 Query 165 TGGGCCGGTGGGATGCAAAATGCGAAGAAAGATAAGGCTTCTGACTTTGGCTATGCCAAT 224 ||||||||||| ||||| ||| |||||||||||| ||||||| |||||| |||| |||| Sbjct 424 TGGGCCGGTGGTATGCACCATGTGAAGAAAGATAAAGCTTCTGGCTTTGGTTATGTCAAT 483 Query 225 GACGTTGTGCTTGGGATTCTCGAGTTGCTCAAAA-CTTTCAAGAGAGTTCTCTACGTAGA 283 ||||||||||||| |||||||||||| || |||| |||||||||||||||||||| |||| Sbjct 484 GACGTTGTGCTTGCGATTCTCGAGTTACT-AAAATCTTTCAAGAGAGTTCTCTACATAGA 542 Query 284 TATTGGCTTTCGTCATGGGGATGGAGTGGAAGAAGCATTTAAGGACACTGATAGAGTTAT 343 ||||| |||| |||||| |||| ||||||||||||||||||||| ||||||||||| || Sbjct 543 AATTGGTTTTCCTCATGGTGATGAAGTGGAAGAAGCATTTAAGGATACTGATAGAGTAAT 602 Query 344 GACTGTTTATTTCCACAAAATTGGGGACTCCGGAGACATAAGTGACTTTGGGGAAGG-AA 402 |||||||| |||||||||| |||||||| |||||||||||||||||| ||||||||| || Sbjct 603 GACTGTTTCTTTCCACAAAGTTGGGGACACCGGAGACATAAGTGACTATGGGGAAGGGAA 662 Query 403 GAGGACAATATTATTCACTAAATGCACCATTGAAGGATGGTTTAGAT 449 ||||||||| |||||||| ||||||||||| ||||||||||| ||| Sbjct 663 -AGGACAATACTATTCACTCAATGCACCATTAAAGGATGGTTTGGAT 708 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23459346649 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5