BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947132
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
AT5G33370.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 2108 0.0
> AT5G33370.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr5:12602468-12604764 REVERSE LENGTH=1500
Length=1500
Score = 2108 bits (1141), Expect = 0.0
Identities = 1256/1312 (96%), Gaps = 6/1312 (0%)
Strand=Plus/Plus
Query 1 CATTTTCAATATATATATACAATGCCGACCTCGGTGGCTAATTTGGCACTACTAGGGTTT 60
|||||| || || |||| |||||| ||| |||||||||||| ||||||||||||||||||
Sbjct 76 CATTTT-AA-ATCTATAAACAATGACGAACTCGGTGGCTAAGTTGGCACTACTAGGGTTT 133
Query 61 TGCATTCTGCAAGTGATGAGCTTACTTGTCCCGCAAGCAAATGCTAGGGCTTTCCTTGTG 120
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 134 TGCATTCTGCAAGTGACGAGCTTACTTGTTCCGCAAGCAAATGCTAGGGCTTTCCTTGTG 193
Query 121 TTTGGAGATTCCCTCGTCGACAATGGTAACAATGACTTTCTAGCTACCACTGCTCGTGCC 180
||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 194 TTTGGAGATTCTCTCGTTGACAATGGTAACAATGACTTTCTTGCTACCACTGCTCGTGCC 253
Query 181 GATAATTACCCTTACGGTATCGATTTCCCAACTCACCGTCCTACCGGCCGTTTCTCCAAT 240
|||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 254 GATAATTACCCTTATGGTATCGATTTCCCAACTCATCGTCCTACGGGCCGTTTCTCCAAT 313
Query 241 GGTCTTAACATTCCAGATCTCATCAGTGAGCATTTGGGTCAAGAGTCTCCAATGCCGTAC 300
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 314 GGTCTAAACATTCCAGATCTCATCAGTGAACATTTGGGTCAAGAGTCTCCAATGCCGTAC 373
Query 301 CTTAGTCCAATGCTGAAGAAGGACAAACTCTTAAGGGGAGCTAACTTCGCCTCCGCGGGT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 CTTAGTCCAATGCTGAAGAAGGACAAACTCTTAAGGGGAGCTAACTTCGCCTCCGCGGGT 433
Query 361 ATTGGAATCCTTAACGACACCGGAATCCAGTTTCTGAACATAATTAGGATCACGAAGCAG 420
|||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 434 ATTGGAATCCTTAACGACACCGGAATCCAGTTTCTGAATATTATTAGGATCACAAAGCAG 493
Query 421 CTGGAGTACTTCGAGCAGTACAAGGTTCGAGTGAGTGGGTTGGTCGGAGAAGAAGAGATG 480
|| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 494 CTAGAGTACTTCGAGCAGTACAAGGTTCGAGTAAGCGGGTTGGTCGGAGAAGAAGAGATG 553
Query 481 AATCGGCTGGTGAACGGAGCTCTTGTCCTAATAACACTTGGAGGCAACGATTTTGTCAAC 540
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 554 AATCGGCTCGTGAACGGAGCTCTTGTCCTAATAACACTTGGAGGCAATGATTTCGTCAAC 613
Query 541 AACTACTACTTGGTCCCTTTCTCTGCAAGATCTCGTCAATTCTCTCTTCCTGACTACGTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 AACTACTACTTGGTCCCTTTCTCTGCAAGATCTCGTCAATTCTCTCTTCCTGACTACGTT 673
Query 601 GTCTTTATCATCTCTGAATACCGCAAAGTCTTACGGAAAATGTACGATTTGGGTGCTCGA 660
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 GTCTTTGTCATTTCTGAATACCGCAAAGTCTTACGGAAAATGTACGATTTGGGTGCTCGA 733
Query 661 CGTGTG-TTGGTGACTGGAACAGGGCCAATGGGTTGCGTCCCGGCCGAACTGGCTCAACG 719
||||| ||| ||||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 734 CGTGTCCTTG-TGACTGGAACAGGACCAATGGGTTGCGTCCCGGCCGAGCTGGCGCAACG 792
Query 720 TAGCCGCAACGGCGAGTGTGCTACTGAACTACAACGAGCTGCTTCACTATTCAACCCACA 779
|||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||||
Sbjct 793 TAGCCGCAACGGCGAGTGTGCTACCGAACTCCAACGAGCCGCGTCACTATTCAACCCACA 852
Query 780 ACTAGTTCAAATGATAACCGACCTCAACAACGAAGTTGGATCTTCGGCCTTCATTGCCGC 839
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 853 ACTAATTCAAATGATAACAGACCTCAACAACGAAGTTGGATCTTCGGCCTTCATTGCCGC 912
Query 840 TAATACTCAACAAATGCACATGGACTTCATCAGCGACCCACAAGCATATGGTTTCGTCAC 899
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 913 TAATACTCAACAAATGCACATGGACTTCATTAGCGACCCACAAGCATATGGATTCGTCAC 972
Query 900 GTCGAAGGTGGCTTGTTGTGGACAAGGGCCCTACAATGGGATAGGGCTATGCACACCATT 959
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 973 GTCGAAGGTGGCTTGTTGTGGACAAGGGCCGTACAATGGGATAGGGCTATGCACTCCATT 1032
Query 960 ATCAAATCTTTGCCCAAACAGAGATCTCTTTGCCTTTTGGGATCCTTTTCACCCATCAGA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 ATCAAATCTTTGCCCAAACAGAGATCTCTTTGCCTTTTGGGATCCTTTTCACCCATCAGA 1092
Query 1020 AAAAGCAAGTAGAATCATTGCTCAACAAATCCTCAATGGCTCTCCTGAATACATGCATCC 1079
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 AAAAGCAAGTAGAATCATAGCTCAACAAATCCTCAATGGCTCTCCTGAATACATGCATCC 1152
Query 1080 CATGAATCTTAGCACCATCCTCACCGTTGATTCCATGACCTAAGCTTCTACTCATCATCT 1139
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1153 CATGAATCTTAGCACCATCCTCACCGTTGATTCCATGACCTAAGCTTCTATTCCTCATCT 1212
Query 1140 ATCCCAAATCCACTCTATGctttgtttttgttttgcctttctcttttattatgtattttt 1199
|||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1213 ATCCCAAATCCACTTTATGCTTTGTTTTTGTTTTGCCTTTCTCGTTTATTATATATTTTT 1272
Query 1200 acattggtgctttaattaatttCCTTGAGTTATGTTGTGAGTTTTGTGTTGTTCATCAAT 1259
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 ACATTGGCACTTTAATTAGTTTCCTTGAGTTATGTTGTGAGTTTTGTGTTGTTCATCAAT 1332
Query 1260 AATTTAGTCACCAAATTGTGAGCTGCGAAGTAATATTCAACAATCTTACGAA 1311
|||| ||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1333 AATT-AGTCACCAA-TTGTGAGCTGAGAAGTAATATTCAACAATCTTACGAA 1382
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64507700325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5