BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947135
Length=1419
Score E
Sequences producing significant alignments: (Bits) Value
AT5G33300.1 | Symbols: | chromosome-associated kinesin-related... 2071 0.0
> AT5G33300.1 | Symbols: | chromosome-associated kinesin-related
| chr5:12562430-12565757 REVERSE LENGTH=1621
Length=1621
Score = 2071 bits (1121), Expect = 0.0
Identities = 1323/1418 (93%), Gaps = 23/1418 (2%)
Strand=Plus/Plus
Query 6 AAACTCATCGCCGGAGATGACGAAGAAGAAGATGAATCTCCGATCAAAGGATTCATCTC- 64
|||||| |||||| |||||||||||||| | |||||||||||||||||||||||||
Sbjct 67 AAACTCTTCGCCGAAGATGACGAAGAAG-CCA--AATCTCCGATCAAAGGATTCATCTCT 123
Query 65 CGAGAGACGATTCCGATAAACTCTACGAGAAGAAGATTCGGGATCTGGAGTCCGTCAACG 124
|| |||||||| | || |||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 124 CG-GAGACGATGCTGAGAAACTCTACGAGAAGAAGATTCTGGATCTGGAGTCCGTGAACG 182
Query 125 AAGCCCTCAAGTGTGATGTGGAAGAGCTAAGGTCAAAATTGGCTGATGTTTCGATAAGCT 184
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 AAGCTCTCAAGAGTGATGTGGAAGAGCTAAGGTCAAAATTGGCTGATGTTTCGATAAGCT 242
Query 185 CTTCGGTTAGTACGTTACAGTCAAGTAGAGAGTTTTCCCAGAAGTCTATTGCTAACAAAG 244
| |||||| |||||||||||||||| ||| ||||||| || |||||||||||||||||||
Sbjct 243 CATCGGTTGGTACGTTACAGTCAAGCAGAAAGTTTTCTCAAAAGTCTATTGCTAACAAAG 302
Query 245 AGGAGGGTATGAGTTCAAGGAGTAAGTCAAATTTGCGTTCTATATGCTCGACAAAGAAGT 304
|||||||||||||||||| | | ||| || | ||||| ||||| ||||||||||
Sbjct 303 AGGAGGGTATGAGTTCAA-G-G--AGT--AA-----G-TCTATGTGCTCCACAAAGAAGT 350
Query 305 ATAAAACTGAGAGTTCTGTTAAGCAGTTTGATGGCGAAGTTCAGAAATTGAAGGCCCAAA 364
||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 351 ATAAAACTGAGAGTTCTGTTAAGCAATTTGATGGTGAAGTTCAGAAATTGAAGGCGCAAA 410
Query 365 AGGTTAAGTTGCACTGCAAGATCAAGCTAGACTCTATGCATTTCAGACTATTGAAAGCTT 424
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 411 AGGTTAAGTTGCATTGCAAGATCAAGCTAGACTCTATGCAGTTCAGACTATTGAAAGCTT 470
Query 425 CACTTGAAAAAGAAGTTCTGCAGCTCAAAAAAGAGCTAAGGAAAAGCGAGTTTGAGAAAC 484
|||| ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 471 CACTAGAAAAGGAAGTTCTTCAGCTCAAAAAAGAGCTAAGGAAAAGTGAGTTTGAGAAAC 530
Query 485 ATGTCCTGTCAGCTTTGAACAATCGCCAGAAGCTGATTTTGCAGCTGAAGAATACACAAG 544
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 ATGTCCTGTCAGCTCTGAACAATCGCCAGAAGCTGATTTTGCAGCTGAAGAATACACAAG 590
Query 545 CTTTGACAGCAATGAAGCGCCTAAAAATGCTGCTTCAGTCTAAAAAGATTTCTTCCAATA 604
|||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 591 CTTTGACAGCCCTGAAGCGTCTAAAAATGCTGCTTCAATCTAAAAAGATTTCTTCCAACA 650
Query 605 AAAATAAAGGCCCATCAAAAGGAACAAGCTCCGGGATTCAGGAGTCTAGCAATGAATCAG 664
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 651 AAAAGAAAGGCCCATCAAAAGGAACAAGCTCCGAGATTCAGGAGTCTAGCAATGAATCAG 710
Query 665 GGCTACTAATGAAGTTGAATAAGATTCATTCTGATTACGAACGCCAAATGAAAGAAATGG 724
| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 711 GCCTACTAATGAAACTGAATAAAATTCATTCTGATTACGAACGCCAAATGAAAGAAATGG 770
Query 725 CTGAAGAGATCAAAAGGTTCAGCTTAGAGGCAGGTGTGTTGAAGGCAGAATTCGAGGGAG 784
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 771 CTGAAGAGATCAAAAGGTTCAGCTTAGAGGCAGGTTTGTTGAAGGCAGAATTTGAGGGAG 830
Query 785 ATCAAAGCTCATGCTCTGCGTCTTGTGACAACCAAATCAACCACACTCCAATAGACTCAG 844
| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 831 AGCAAAGCTCATGTTCTGCGTCTTGTGACAACCAAATCAACCACACTCCAATGGACTCAG 890
Query 845 AACTAAAGGAACTCAAAGAGGAATTTAACAAACTGAGTACTCTGGTCAGCCAGATGGAAA 904
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 891 AACTAAAGGAACTCAAAGAGGAATTTAACAAACTGAGTACTCTTGTCAGCCAGATGGAAA 950
Query 905 TGACCAAATCCCAATTCAGTGAAACAGATAAAGTTCAGGGCGAACCAGCT-GAACGCTCC 963
|||||||||| |||||||||||||| |||||||||||| ||||||||| | ||||||||
Sbjct 951 TGACCAAATCACAATTCAGTGAAACTGATAAAGTTCAGAGCGAACCAG-TGGAACGCTCT 1009
Query 964 ATTACCAGCAAGAATATCGACGATCAATCAACCTCGGAGCCATCTCAACTGGAAACTTCT 1023
|| ||||||||||||||||||||| |||||| ||||||||||| ||||| ||||||||||
Sbjct 1010 ATCACCAGCAAGAATATCGACGATGAATCAAACTCGGAGCCATTTCAACCGGAAACTTCT 1069
Query 1024 GAGGAAACTCTTTGCAAAAAGGAAGAGAACAAAGCAGAAGTGTGTTGCTCTTGCACTAAA 1083
|||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1070 GAGGAAACACTTTGCAAAAAGGAACAGAGCAAAGCAGAAGTGTGTTGCTCTTGCACTAAA 1129
Query 1084 AAATCTTTGTGCAAGACCAAAAGTTGCAAATGCAAGGCAAATGGAAGTGGATGTGGGGAC 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 AAATCTTTGTGCAAGACCAAAAGTTGCAAATGCAAGGCAAATGGAAGTGGATGTGGGGAC 1189
Query 1144 TCCTGTGGCTGCTTAGCTTCCAAATGTAGCAACAGAGAAGAAACTGTAAAACCCGACAAA 1203
|| ||||||||||||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct 1190 TCTTGTGGCTGCTTAGCTTCCAAATGTAGCAACAGAGACGAAAGTGCGAAACCCGACAAA 1249
Query 1204 CCAATGGAACCACTAGATGGTAAGAAGCCTGCTGGAATTAGCCCTGACAACAAAGGCGCA 1263
|||||||||||| |||||| ||||||||||||||||||||||| |||| |||||||||||
Sbjct 1250 CCAATGGAACCAATAGATGTTAAGAAGCCTGCTGGAATTAGCCATGACGACAAAGGCGCA 1309
Query 1264 AACAAACAACCATTACGTGACATAGGGAATATACAAGAAGCTGTAAAAGTTGGTAAGTTG 1323
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 AATAAACAACCATTACGTGACATAGGGAATATACAAGAAGCTGTAAAAGTTGGTAAGTTG 1369
Query 1324 AGGAAAGTGCGGAAACGAGTTGCTAAGAAATAATGAAAAT-GATAAAAGGATATGAATGT 1382
|||||||||| |||||| |||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1370 AGGAAAGTGCAGAAACGGGTTGCTAAGAAATAATGAAAATTGATAAAAGGATATGAAAGT 1429
Query 1383 AAACAGAGAAACTCTTCTA-GAAGCTTAAACGGTTTTT 1419
|||||||||||| ||| || |||||||||||| |||||
Sbjct 1430 AAACAGAGAAACACTT-TAAGAAGCTTAAACG-TTTTT 1465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69929359185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5