BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947146
Length=1132
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67270.1 | Symbols: | Zinc-finger domain of monoamine-oxida... 551 6e-156
> AT1G67270.1 | Symbols: | Zinc-finger domain of monoamine-oxidase
A repressor R1 protein | chr1:25183177-25185939 REVERSE
LENGTH=1772
Length=1772
Score = 551 bits (298), Expect = 6e-156
Identities = 734/941 (78%), Gaps = 44/941 (5%)
Strand=Plus/Plus
Query 192 TTGAGGTTCAAATGCCTGAAGTTATAAATTTAACTTCCGTTTTAGGCTTTGATGTACCTT 251
|||||| |||| | ||||| | ||||| || |||| |||| | || ||||| ||||
Sbjct 733 TTGAGGCTCAACTTCCTGAGGGTATAAGCTTGACTTGTGTTTCACGCATTGATATACCAA 792
Query 252 TTGAAGAAGTTGGAAATTTATTTCAACTTCTAGAATTTTGTTCAGTCTTTGGAAAGG-AT 310
|||||||| ||||||| ||| ||| ||| | || ||||| |||| ||||||||||| |
Sbjct 793 CTGAAGAAGCTGGAAATGTATGTCAGCTTTTCGAGTTTTGCTCAGCCTTTGGAAAGGCA- 851
Query 311 CTGGGTTTG-AGAGAAGGACAACCT-ACATCTATTGTGCACGAGCT-TTTTTCAAGCGAG 367
|| | |||| || |||||||| || | | ||||||| | ||||| ||| | | | | |
Sbjct 852 CTTGCTTTGAAG-GAAGGACATGCTGA-AACTATTGTCCGTGAGCTGTTTAT-ATGTGGG 908
Query 368 CGT-ACA-AAGG-GACAACAATACTGCTCTATTATCTC-GATGATAATCCAGTTGTTGGA 423
||| ||| |||| ||||||||||||||||||||| ||| |||||| ||||||||||||||
Sbjct 909 CGTAACACAAGGAGACAACAATACTGCTCTATTA-CTCAGATGATGATCCAGTTGTTGGA 967
Query 424 GTTAATATCACATGATAGAAATATGTCTTTGTCTTTAAGTGAAATTAATAACAATTGGTT 483
||||||||| | |||||| | |||||||||||| |||||| || | | || ||||||
Sbjct 968 TTTAATATCAAAGGATAGAGAGATGTCTTTGTCTCTAAGTGCAACGGACAGCAGTTGGTT 1027
Query 484 CAATGCTATTGGGGATTTAGTATTGAAGTCGGGAGTTTTAAGTAATGAATTCCCACCT-G 542
|| ||||| || || | ||| |||||| | |||||| ||| |||| ||||| || |
Sbjct 1028 CACGGCTATAGGAGAGATCCTATCGAAGTCAGAAGTTTTGAGTGATGAGCTCCCA-CTAG 1086
Query 543 AAACATTTAAAGGAGGTGATGCAAAGTATAATG-AGATGGATGCTTCAAGAAGGCTCAAG 601
|||| ||| ||| |||| ||| |||| | | ||||| |||| ||||||| |||||||
Sbjct 1087 AAACTTTTGTAGGGGGTGTTGCTGCGTATGA-GAAGATGAATGCATCAAGAAAGCTCAAG 1145
Query 602 CTTCTGAACTTCTTATGTGATGAATCACTTACCACATTGGCAATGAGGAA-TATCATTAA 660
||||| || |||||||||||||||||||||| ||||| |||||||||||| || ||| ||
Sbjct 1146 CTTCTAAATTTCTTATGTGATGAATCACTTAGCACATGGGCAATGAGGAATTA-CATAAA 1204
Query 661 GAACaaaattttggagtttgaagcaa-agaaaaaagaagcaaaacaaaaggctacagttg 719
| | ||| | |||| || || || |||||| ||||| |||||||||||| ||| |
Sbjct 1205 TAGCCAAACTGAAGAGTGTGGAG-AACGGAAAAAGGAAGCTAAACAAAAGGCTGCAGCCG 1263
Query 720 caaataaaaaggaaaaaCAACTGAGGA-AGACGATGCGAA-GTGATTTTGCCAAAATCTA 777
|||| ||||||| || || || | | ||| ||||| || |||| ||||| ||||| |
Sbjct 1264 CAAAGCAAAAGGAGAAGCAGCTCA-AACAGAAGATGC-AAGGTGAGGTTGCC-AAATCCA 1320
Query 778 -TAAGGA-AAATACCGGAGTTCCGCTCTCCAGTGAAGAGCATAAC-AAACTTTTGTCTCA 834
|| ||| ||| | ||||| ||| | || | ||| || || ||| || | |||||||
Sbjct 1321 TTATGGAGAAA-AACGGAGCTCCATTGTCTATTGAGGAACACAACTCAA-TCGTGTCTCA 1378
Query 835 ACTAAGAGCTCAAGCTAAAGAAGCTCATGACGAGATGATGGAGGCAAAGAACAT-AATTT 893
| |||||| | ||||||||||||||||||| || ||||||||||||||| ||| || |
Sbjct 1379 AATAAGAGATGAAGCTAAAGAAGCTCATGAAGAAATGATGGAGGCAAAGGGCATGAA-AT 1437
Query 894 CTAAAAAGATGCAAACATGTGATGTTG-TTAGAACTG-ACCAAAACATAATAGAGGACAA 951
|||||| || || | |||||||| | |||||| | ||| || ||| | || || ||
Sbjct 1438 CTAAAATGACGCTTATATGTGATG-CGCGTAGAACGGAACC-AATCATGTTGGATGATAA 1495
Query 952 TGGACTTGTTCTCTGGAAACTT-AAGTGTTTTGAGGAAGAACCAA-AGTTTTTGCTTCAA 1009
||| |||||||||||||| || ||||||||||| |||||| ||| ||||||||||||
Sbjct 1496 TGGTTTTGTTCTCTGGAAA-TTGAAGTGTTTTGAAGAAGAA-CAATTTTTTTTGCTTCAA 1553
Query 1010 GATCTAGGAACATTTGATGATTTAAGTCCTTATGAAAAATGGTTAGCCTTTAAGGCTGAA 1069
|||||||||||||||||||||||| |||| |||||| ||||||||| ||||| ||||
Sbjct 1554 GATCTAGGAACATTTGATGATTTATGTCCACATGAAAGATGGTTAGCTTTTAAACCTGAG 1613
Query 1070 CAGAAAG-AGGAGATAGAGAAATTTATCTCTTCCAAGAGGT 1109
|||||| || |||||||||| | |||||||| |||||||
Sbjct 1614 CAGAAACCAG-AGATAGAGAA-TATATCTCTTGTAAGAGGT 1652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55521802770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5