BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947153

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G28930.1 | Symbols: AIG2 | AIG2-like (avirulence induced gen...   263    8e-70


> AT3G28930.1 | Symbols: AIG2 | AIG2-like (avirulence induced gene) 
family protein | chr3:10959686-10960808 REVERSE LENGTH=797
Length=797

 Score =  263 bits (142),  Expect = 8e-70
 Identities = 181/200 (91%), Gaps = 2/200 (1%)
 Strand=Plus/Plus

Query  20   AATGACTAGCTCTGATCAATCTCCGTCGCACAACGTCTTCGTCTACGGCAGTTTCCAAGA  79
            |||||| ||||| ||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct  80   AATGACAAGCTCCGATCAATCTCCATCGCACGACGTCTTCGTCTACGGCAGTTTCCAAGA  139

Query  80   ACCAGCCGTCGT-AAGTTTGATTCTTGAATGTTCTCCGGTCATCGTCTCTGCTCAACTCC  138
            ||||||||| || || ||| ||||| |||||| |||||||||| || || ||||||||||
Sbjct  140  ACCAGCCGTTGTTAA-TTTAATTCTCGAATGTGCTCCGGTCATGGTTTCCGCTCAACTCC  198

Query  139  ACGGCTATCACTTGTATAGACTCAAAGGACGTTTGCATCCATGTATTTCTCCTTCTGAGA  198
            |||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |
Sbjct  199  ACGGCTATCACTTGTATAGACTTAAAGGTCGTTTGCATCCATGTATTTCTCCTTCCGACA  258

Query  199  ATGGAGTAATCAAAGGCAAG  218
            ||||| ||||||| ||||||
Sbjct  259  ATGGATTAATCAATGGCAAG  278



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14527379461


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5