BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947157

Length=379
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G35110.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   560    3e-159


> AT5G35110.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT2G46490.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:13363937-13364275 REVERSE LENGTH=339
Length=339

 Score =  560 bits (303),  Expect = 3e-159
 Identities = 328/340 (96%), Gaps = 2/340 (1%)
 Strand=Plus/Plus

Query  21   ATGGCTGCCGGATCCATGGACGGAATATTCCGCAACAT-TTTCGAAGGTTGCATCTCTAG  79
            |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct  1    ATGGCTGCCGGATCCATGGACGGAATATTCCGCAACATCTTT-GAAGGTTGCATCTCTAG  59

Query  80   CTGCGACTCTTCCATCCAACGACGTCCATACCACAAGAACTGCGGTTGCGCGCTTCACGA  139
            ||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct  60   CTGTGACTCTTCCATCCAACGACGTCCATACCACAAGAACTGCGGTTGTGCCCTTCACGA  119

Query  140  GAGATCTCGCGGTGGAGGTTCAGCGACCCCTTGTCGTCATGGAAGGTCTGAGGTCATTAT  199
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct  120  GAGATCTCGCGGTGGAGGTTCAGCGACTCCTTGTCGTCATGGAAGGTCTGAGGTCGTTAT  179

Query  200  GCTCCCAATCCAACGGTCTTGGAGTGAAGGAAACAGTTTGGCTCTGCATCTTGCCTCATC  259
            | |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  180  GTTCCCTATCCAACGATCTTGGAGTGAAGGAAACAGTTTGGCTCTGCATCTTGCCTCATC  239

Query  260  TTCTTCTTCCTCTAACCTCCAGTCAATTTCGTCGTCTTCGTCTATTTCTACCCTCGCATC  319
            ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct  240  TTCTTCTTCCTCTAACCTCCAGTCACTTTCGTCGTCTTCGTCTATTTCTACCCTTGCATC  299

Query  320  GTTATCTTCGACCGTGTCTGATATTGATTCTCCCATTTAA  359
            ||||||||||||||||||||||||||||||||||||||||
Sbjct  300  GTTATCTTCGACCGTGTCTGATATTGATTCTCCCATTTAA  339



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17845050895


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5