BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947169
Length=508
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00900.1 | Symbols: RPS7.1, RPS7 | Ribosomal protein S7p/S5e... 859 0.0
ATCG01240.1 | Symbols: RPS7.2 | ribosomal protein S7 | chrC:140... 859 0.0
> ATCG00900.1 | Symbols: RPS7.1, RPS7 | Ribosomal protein S7p/S5e
family protein | chrC:97478-97945 REVERSE LENGTH=468
Length=468
Score = 859 bits (465), Expect = 0.0
Identities = 467/468 (99%), Gaps = 0/468 (0%)
Strand=Plus/Plus
Query 21 ATGTCACGCCGAGGTACTGCAGAAGAAAAAACTGCAAAATCCGATCCAATTTATCGTAAT 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCACGCCGAGGTACTGCAGAAGAAAAAACTGCAAAATCCGATCCAATTTATCGTAAT 60
Query 81 CGATTAGTTAACATGTTGGTTAACCGTATTCTGAAACACGGaaaaaaaTCATTGGCTTAT 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGATTAGTTAACATGTTGGTTAACCGTATTCTGAAACACGGAAAAAAATCATTGGCTTAT 120
Query 141 CAAATTATCTATCGAGCCTTGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCT 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAAATTATCTATCGAGCCTTGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCT 180
Query 201 GTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAAGCAAGACGTGTA 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAAGCAAGACGTGTA 240
Query 261 GGCGGGTCAACTCATCAAGTTCCCATTGAAATAGGATCCACGCAAGGAAAAGCACTTGCC 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGCGGGTCAACTCATCAAGTTCCCATTGAAATAGGATCCACGCAAGGAAAAGCACTTGCC 300
Query 321 ATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCAAAATATGGCTTTCAAATTA 380
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 301 ATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTA 360
Query 381 AGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGCAAAAAGGAAGAG 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGCAAAAAGGAAGAG 420
Query 441 ACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA 488
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA 468
> ATCG01240.1 | Symbols: RPS7.2 | ribosomal protein S7 | chrC:140704-141171
FORWARD LENGTH=468
Length=468
Score = 859 bits (465), Expect = 0.0
Identities = 467/468 (99%), Gaps = 0/468 (0%)
Strand=Plus/Plus
Query 21 ATGTCACGCCGAGGTACTGCAGAAGAAAAAACTGCAAAATCCGATCCAATTTATCGTAAT 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCACGCCGAGGTACTGCAGAAGAAAAAACTGCAAAATCCGATCCAATTTATCGTAAT 60
Query 81 CGATTAGTTAACATGTTGGTTAACCGTATTCTGAAACACGGaaaaaaaTCATTGGCTTAT 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGATTAGTTAACATGTTGGTTAACCGTATTCTGAAACACGGAAAAAAATCATTGGCTTAT 120
Query 141 CAAATTATCTATCGAGCCTTGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCT 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAAATTATCTATCGAGCCTTGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCT 180
Query 201 GTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAAGCAAGACGTGTA 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAAGCAAGACGTGTA 240
Query 261 GGCGGGTCAACTCATCAAGTTCCCATTGAAATAGGATCCACGCAAGGAAAAGCACTTGCC 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGCGGGTCAACTCATCAAGTTCCCATTGAAATAGGATCCACGCAAGGAAAAGCACTTGCC 300
Query 321 ATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCAAAATATGGCTTTCAAATTA 380
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 301 ATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTA 360
Query 381 AGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGCAAAAAGGAAGAG 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGCAAAAAGGAAGAG 420
Query 441 ACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA 488
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA 468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24263093001
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5