BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947170
Length=1717
Score E
Sequences producing significant alignments: (Bits) Value
AT2G07080.1 | Symbols: | transposable element gene | chr2:2936... 1027 0.0
ATCG01230.1 | Symbols: RPS12B, RPS12 | ribosomal protein S12B |... 462 4e-129
ATCG00905.1 | Symbols: RPS12C, RPS12 | ribosomal protein S12C |... 420 3e-116
> AT2G07080.1 | Symbols: | transposable element gene | chr2:2936239-2938827
FORWARD LENGTH=2589
Length=2589
Score = 1027 bits (556), Expect = 0.0
Identities = 626/658 (95%), Gaps = 12/658 (2%)
Strand=Plus/Minus
Query 885 GAAATCTTCG-ttttttttCTCTTTCTCTATCGCTTTCCCAGAAGTACAGCACTTGTTGA 943
|||||||| | |||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 2589 GAAATCTTTGTTTTTTTTTCTCTTTCTCTATCGCTTTCCCATAAGTACAACACTTGTTGA 2530
Query 944 ATCGATAGAGAACCTTTTCTTCTGTATCGATATGAATCCATTATGAATCGATATTATTAC 1003
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2529 ATCGATAGAGAACCTTGTCTTATGTATCGATATGAATCCATTATGAATCGATATTATTAC 2470
Query 1004 ATTCCAATTCCTTACCAATATCCCTCAAGGAAAATCCCGAATTGGATCCCAAATTGACGG 1063
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 2469 ATTCCAATTCCTTACCAATATCCCTCAAGGAAAATTCCGAATTGGATCCCAAATTGGCGG 2410
Query 1064 GTTAGTGTGAGCTTATCCATGCGGTTATGCACTCTTCGAATAGGAATTCATTTTCTGAAA 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2409 GTTAGTGTGAGCTTATCCATGCGGTTATGCACTCTTCGAATAGGAATTCATTTTCTGAAA 2350
Query 1124 GATCCTGGCTTTCGTGCTTTGGCGGGTCTCCGAGATCCTTTCGACGACCTATGTTGTGTT 1183
||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2349 GATTTTGGCTTTCGTGCTTTGGCAGGTCTCCGAGATCCTTTCGACGACCTATGTTGTGTT 2290
Query 1184 GAAGGGATATCTAGATGATCCGATCGATTGCGTAAAGCCCGCAGTAGCAACGGAACCGGG 1243
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 2289 GAAGGGATATCTAGATGATCCGATCAATTGCGTAAAGCCCGCAGTAGCAACGAAACCGGG 2230
Query 1244 GAAAGTATACATAAGTATACAGAAAAGACAGTTCTTTTCTTTTCTATTATATTAGGATTT 1303
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 2229 GAAAGTATACATAAGTATAAAGAAAAGACAGTTCTTTTCTTTTCTATTATATTAGGGTTT 2170
Query 1304 TCTATTCTATTAGATTAGTATTAGTTAGTGATCTTGGCGCAGTGAGTCCTTTCTTCCGTG 1363
||||||||||||||||||| | ||| | ||||||||||||||||||||||||||||||
Sbjct 2169 TCTATTCTATTAGATTAGT-T-AGT--G--ATCTTGGCGCAGTGAGTCCTTTCTTCCGTG 2116
Query 1364 ATTAACTGTTGGCACCAGTCCTACATTTTGTCTCTGTGGACCGAGAAGAAAGGAGGCTCA 1423
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2115 ATTAACTGTTGGCACCAGTCCTACATTTTGTCTCTGCGGACCGAGAAGAAAGGAGGCTCC 2056
Query 1424 GCGGGAAGAGGATTGTACCATAGAAGCAAGGAGGTAAACCTCTTTCCAATATATAACATG 1483
|||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||| ||
Sbjct 2055 GCGGGAAGAGGATTATACCATAGAAGCAAGTAGGCAAACCTCTTTCCAATATATAA-AT- 1998
Query 1484 AATTCTGGCAATGTAGTTGGGCTTTCATGTTGATCCGAATGAATCATCTTTTTCGCGG 1541
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1997 --T-CTGGCAATGTAGTTGGGCTTTCATGTTGATCCGAATGAATCATCTTTTTTGCGG 1943
> ATCG01230.1 | Symbols: RPS12B, RPS12 | ribosomal protein S12B
| chrC:139856-140650 FORWARD LENGTH=258
Length=258
Score = 462 bits (250), Expect = 4e-129
Identities = 257/260 (99%), Gaps = 2/260 (1%)
Strand=Plus/Minus
Query 33 TTATTTTGGCTTTTTGACCCCATATTGTAGGAACGCCCTTGTTGACGATCCTTTACTCCG 92
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 258 TTATTTTGGCTTTTTGACCCCATATT-TA-GAACGCCCTTGTTGACGATCCTTTACTCCG 201
Query 93 ACAGCATCTAGGGTTCCTCGAATAATGTGATATCTCACACCGGGTAAATCCTTAACCCTT 152
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 200 ACAGCATCTAGGGTTCCTCGAACAATGTGATATCTCACACCGGGTAAATCCTTAACCCTT 141
Query 153 CCCCCTCTTACTAAGACTACAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAA 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 CCCCCTCTTACTAAGACTACAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAA 81
Query 213 GCAGTGATTTCAAATCCCGAGGTTAATCGTACTCTGGCAACTTTACGTAAAGCAGAGTTT 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 80 GCAGTGATTTCAAATCCCGAGGTTAATCGTACTCTGGCAACTTTACGTAAAGCAGAGTTT 21
Query 273 GGTTTTTTGGGGGTGATAGT 292
||||||||||||||||||||
Sbjct 20 GGTTTTTTGGGGGTGATAGT 1
> ATCG00905.1 | Symbols: RPS12C, RPS12 | ribosomal protein S12C
| chrC:97999-98793 REVERSE LENGTH=258
Length=258
Score = 420 bits (227), Expect = 3e-116
Identities = 229/230 (99%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 63 GAACGCCCTTGTTGACGATCCTTTACTCCGACAGCATCTAGGGTTCCTCGAATAATGTGA 122
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 256 GAACGCCCTTGTTGACGATCCTTTACTCCGACAGCATCTAGGGTTCCTCGAACAATGTGA 197
Query 123 TATCTCACACCGGGTAAATCCTTAACCCTTCCCCCTCTTACTAAGACTACAGAATGTTCT 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 TATCTCACACCGGGTAAATCCTTAACCCTTCCCCCTCTTACTAAGACTACAGAATGTTCT 137
Query 183 TGTAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCCGAGGTTAATCGT 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 TGTAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCCGAGGTTAATCGT 77
Query 243 ACTCTGGCAACTTTACGTAAAGCAGAGTTTGGTTTTTTGGGGGTGATAGT 292
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 ACTCTGGCAACTTTACGTAAAGCAGAGTTTGGTTTTTTGGGGGTGATAGT 27
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84889121595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5