BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947174
Length=878
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35330.1 | Symbols: MBD02, MBD2, ATMBD2 | methyl-CPG-binding... 1164 0.0
> AT5G35330.1 | Symbols: MBD02, MBD2, ATMBD2 | methyl-CPG-binding
domain protein 02 | chr5:13523475-13525787 REVERSE LENGTH=1224
Length=1224
Score = 1164 bits (630), Expect = 0.0
Identities = 740/793 (93%), Gaps = 7/793 (1%)
Strand=Plus/Plus
Query 89 TGAGGATAGAGGTGAGAATCAGTTGGTGGTTTATGACTTGAAAGG-AA--ATGATACTGA 145
|||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 203 TGAGGATAGAGGTGAGAATCAGTTAGTGGTTTATGACTTGAAAGGAAATGATGATACTGA 262
Query 146 AGAAGAAGTTCTCCCGATTCAATCTCAG-CTTCCGTCATCCAGGACACAGTGTCCCTCTA 204
|||||||||||| ||| ||||||||||| ||| |||||| || ||||||||||||||||
Sbjct 263 AGAAGAAGTTCTACCGGTTCAATCTCAGCCTT-TGTCATCTAGAACACAGTGTCCCTCTA 321
Query 205 TTGGGGCTTTTACGGTTCAGTGTGCTAGTTGTTTCAAATGGAGACTTATGCCTTCGATGC 264
| ||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 322 TCGGGGCATTTACGGTTCAGTGTGCAAGTTGTTTCAAATGGAGACTCATGCCTTCAATGC 381
Query 265 AGAAGTATGAAGAGATTAGGGAACAACTTCTAGAAAACCCGTTTTTCTGTGAAACAGCAC 324
||||||||||||||||||||||||| ||||| ||||||||||||||||| || ||||| |
Sbjct 382 AGAAGTATGAAGAGATTAGGGAACAGCTTCTTGAAAACCCGTTTTTCTGCGATACAGCGC 441
Query 325 GTGAATGGAAGCCAGATATTTCTTGCGATGTTCCTGCTGATATCTATCAAGATGGAACTC 384
|||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 442 GTGAGTGGAAGCCGGATATTTCTTGTGATGTTCCTGCTGATATCTATCAAGATGGAACTC 501
Query 385 GTGTTTGGGCTATCGATAAGCCGAATATCTCTCGCCCACCCGCTGGCTGGCAACGTTTAC 444
|| |||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 502 GTCTTTGGGCTATTGATAAACCGAATATCTCTCGTCCACCCGCTGGCTGGCAACGTTTAC 561
Query 445 TGCGGATTAGAGGTGAAGGAGGTACCAGATTTGCCGATGTCTATTATGTTGCTCCTTCAG 504
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || |
Sbjct 562 TGCGGATTAGAGGTGAAGGAGGTACCAGATTTGCTGATGTTTATTATGTTGCTCCGTCTG 621
Query 505 GGAAGAAGCTTCGATCAACTGTGGAGGTCCAAAAGTACTTGAACGACAACCCCGAATACA 564
| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 622 GAAAGAAGCTTCGATCAACTGTGGAGGTCCAAAAGTACTTGAATGACAACTCCGAATACA 681
Query 565 T-GAGTGAAGGGGTGAAACTTTCACAGTTCTCGTTCCAAATCCCGAAACCGCTACAGGAT 623
| | | ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 682 TTG-GAGAAGGGGTGAAACTTTCACAGTTCTCGTTTCAAATCCCGAAACCGCTGCAGGAT 740
Query 624 GACTATGTGAGGAAGCGCCCAGCTCGACTAGTGGATTCCATCGATAATACAAACACCCAT 683
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 741 GACTACGTGAGGAAGCGCCCAGCTCGACTACTGGATTCCATCGATAATACAAACACCCCT 800
Query 684 GTAGCTAAAGAAGCTAATCCACTAGCATGGATCTCTCCAGATGATCATATAGCGTTGCAG 743
||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||
Sbjct 801 GTAGCTAAAGAAGCTAATCCACTGGCATGGATATCTCCAGATGATCATATATCGTTGCAG 860
Query 744 CTAGGTACGCCAACCGAGTCTGGACTTTACAATTCACATGATCAACCATCGaaaaagaaa 803
||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||
Sbjct 861 CTAGGTACGCCAACCGAGTCTGGACTTAACAATTCACATTACCAACCATCGAAAAAGAAA 920
Query 804 aaaaCATCGAAGCTATCGATCTTTGGCGCCAACGACGAACTTGCTGATAGATAATCTAGC 863
|||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 921 AAAACATCGACGCTATCAATCTTTGGCTCCAACGACGAACTTGCTGATAGATAATCTAGC 980
Query 864 TAGACAAGAGTGA 876
||||| |||||||
Sbjct 981 TAGACGAGAGTGA 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42849727391
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5