BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947180
Length=1304
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35400.2 | Symbols: | Pseudouridine synthase family protein... 1635 0.0
> AT5G35400.2 | Symbols: | Pseudouridine synthase family protein
| chr5:13599220-13602269 REVERSE LENGTH=1641
Length=1641
Score = 1635 bits (885), Expect = 0.0
Identities = 989/1039 (95%), Gaps = 8/1039 (1%)
Strand=Plus/Plus
Query 1 CGGCTTAGGTCAATCAGACAATGGCGAGCAGAGTTTACGTTCATTACCACCACGCCGATG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10 CGGCTTAGGTCAATCAGACAATGGCGAGCAGAGTTTACGTTCATTACCACCACGCCGATG 69
Query 61 CCTGTAGCAAAGCTCGCTGGAACGCCAGAGAAACCTTTAGGTTTATGTATGATAGGCCTT 120
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 70 CCTGTAGCAAAGCTCGCTGGAACGCCAGAGAGACATTTAGGTTTATGTATGATAGGCCTT 129
Query 121 GGAAACATGTTCTTGATTTCTACTCAAACGCAGTGGAAGGGAATCTTTCTGTCCTGAATC 180
|| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
Sbjct 130 GGCAACATGTTCTTGACTTCTACTCAAATGCAGTGGAAGGGAATCTTTCTGTCCTGAGTT 189
Query 181 TGTTTCAGCCTAAAAAATCTTTGGTACATGATGATGGGATAAAC-GAAGAGATGTCT-CT 238
||||||||||||||||||||||||| |||||||||||||||| | ||||||||| || ||
Sbjct 190 TGTTTCAGCCTAAAAAATCTTTGGTTCATGATGATGGGATAA-CTGAAGAGATG-CTTCT 247
Query 239 TGAAACGGAATCAGAGACTTCTACTAGAAAAGACGGGAGGTCTGGGAGGTGGGAAAGAGT 298
|||| ||||| | |||||||||||| | |||||||||||||| |||||||||||||||||
Sbjct 248 TGAATCGGAACCGGAGACTTCTACTCGGAAAGACGGGAGGTCGGGGAGGTGGGAAAGAGT 307
Query 299 GAATTTCAAGATCGTGCTTTCGTACAATGGGACTTCTTTTGATGGATGGCAGAAACAGCC 358
||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 308 GAATTTCAAGATCGTTCTTTCGTATAATGGGGCTTCTTTTGATGGATGGCAGAAACAGCC 367
Query 359 TGACTTACATACTGTTCAGGGTGTAGTAGAGAAGTCTCTCGGGGGATTTGTTGATGAAAG 418
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 368 TGACTTACATACTGTTCAGGGTGTAGTAGAGAAGTCTCTAGGGGGATTTGTTGATGAAAG 427
Query 419 GAAAGCCCAACTGCTCAAGAAAAAATGTAAACCATTGGAAGGACGTGTACTTGTTGCTGG 478
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 428 GAAAGCTCAACTGCTCAAGAAAAAATGTAAACCATTAGAAGGACGTGTACTTGTCGCTGG 487
Query 479 AAGAACCGACAAAGGAGTGTCTGCTCTTAATCAAGTTTGTTCTTTCTATACATGGAGAAA 538
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 AAGAACCGATAAAGGAGTGTCTGCTCTTAATCAAGTTTGTTCTTTCTATACATGGAGAAA 547
Query 539 AGACATTGAACCCATTGCTATTGAAGATGCTATCAATAAAGATGCTTCTGGGAAACTAAG 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 548 AGACATTGAACCCATTGCTATTGAAGATGCTATCAATAAAGATGCTTCTGGGAAGCTAAG 607
Query 599 GGTTGTGTCAATCTCTAAGGTTTCCCGATCATTTCACCCAAATTTCTCTGCAAAATGGAG 658
|||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 608 GGTTGTATCAATCTCTAAGGTTTCCCGTTCATTTCACCCAAATTTCTCGGCAAAATGGAG 667
Query 659 GCGCTACTTGTATATCTTTCCCTTGGATGATGCTGAGCCATTGC-ACAAAAGTGGCGAAA 717
|||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||| |
Sbjct 668 GCGCTACTTGTATATCTTCCCCTTGGATGATGCTGAGCCATTGCGA-AAAAGTGGCGAGA 726
Query 718 ATCATGAGAACTTCATCTTTGATGAGAACAATGAAAA-GCAAAGAAATGGACTCTTAAGT 776
||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 727 ATCATGAGAACTTTATCTTTGATGAGAACAA-GAAAAAGCAAAGAAATGGACTCTTAAGT 785
Query 777 GAAGAGAATACTGAAGAAGTAATATTGAGCGAGGATGATGAGATTGAAATTGAGGAAACC 836
||||||| | |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 786 GAAGAGATTGCTGAAGAAGTAATAATGAGCGAGGATGATGAGCTTGAAATTGAGGAAACC 845
Query 837 AGCAATGGGCTTGAAGTAGTTGAAAAACCAAGTGACTTCAGTATAAGCAAGGTTGATCAA 896
||||||| |||||||||||| ||||||||||||||||| ||| |||||||||||||||||
Sbjct 846 AGCAATGCGCTTGAAGTAGTAGAAAAACCAAGTGACTTTAGTGTAAGCAAGGTTGATCAA 905
Query 897 CTTTTACAGCAGCTTCAAGGAAAAGTATTATCCTACAAGACGTTTGCGCGTGATACAAAA 956
||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 906 CTTTTGCAGCACCTTCAAGGAAAAGTATTATCCTACAAGATGTTTGCGCGTGATACAAAA 965
Query 957 GCTGCAAGAAACGAAGGTCCGCCTACAGAATGTTTTATGTACCATGCACGGGCAGCCGAG 1016
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 GCTGCAAGAAACGAAGGTCCGCCTACAGAATGTTTTATGTACCATGCACGGGCAGCCGAA 1025
Query 1017 ATTAGATTGTCCTGTTCTG 1035
|||||||||||| ||||||
Sbjct 1026 ATTAGATTGTCCAGTTCTG 1044
Score = 462 bits (250), Expect = 3e-129
Identities = 264/271 (97%), Gaps = 0/271 (0%)
Strand=Plus/Plus
Query 1034 TGACTGTGTGGAAGGGAGAAGGGTTATGTGTGTTGAGCTTGTCGCTAACCGATTTCTCCG 1093
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1196 TGACTGTGTGGAAGGAAGAAGGGTTATGTGTGTTGAGCTTGTGGCTAACCGATTTCTCCG 1255
Query 1094 CAAGATGGTTCGAGTTCTTGTGGCAACATCAATCCGAGAAGCTGCCGCTGGTGCAGAAAA 1153
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1256 CAAGATGGTTCGAGTTCTTGTGGCAACATCAATCCGAGAAGCTGCCGCTGGTGCGGAAGA 1315
Query 1154 TGATGCATTGTTAAAACTGCTAGAAGCTTCATGCAGACGAGCCACAGCTCCTCCAGCTCC 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 TGATGCATTGTTAAAACTGCTAGAAGCTTCATGCAGACGAGCCACAGCTCCTCCAGCTCC 1375
Query 1214 ATCTGAAGGTCTCTGTCTATTCGACGTTGGTTATGCTGACTTTGACCCTCAAACTTCTCT 1273
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1376 ATCTGAAGGTCTCTGTCTATTCGACGTTGGTTATACTGACTTTGACCCTCAAACTTCTCT 1435
Query 1274 CATTTCGTGAGAATGGCATGTTACATGTACT 1304
|||||| ||||||||||||||||||| ||||
Sbjct 1436 CATTTCCTGAGAATGGCATGTTACATTTACT 1466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64156296510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5