BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947181

Length=205
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G46180.1 | Symbols: DELTA-OAT | ornithine-delta-aminotransfe...   171    3e-42


> AT5G46180.1 | Symbols: DELTA-OAT | ornithine-delta-aminotransferase 
| chr5:18718475-18721375 REVERSE LENGTH=1823
Length=1823

 Score =  171 bits (92),  Expect = 3e-42
 Identities = 139/162 (86%), Gaps = 2/162 (1%)
 Strand=Plus/Plus

Query  18   CTAATGGGAGCCAATAAGAGACGATTGCTTCACTGTGTGTCTAAAACAGTT-TCTATCGC  76
            ||||||| |||||  | |||||| |||||| ||| |||||| |||| | || |||| |||
Sbjct  102  CTAATGGCAGCCACCACGAGACGGTTGCTTTACTATGTGTCCAAAAGA-TTCTCTACCGC  160

Query  77   CGGAGTGCGACGGAGCTATGGCGGTGTTCCGCAATCGAACTCTAAATCTCCTACGTCTTT  136
            ||||||||| ||||||||||||||| | || |||||||| || ||||||||| |||||| 
Sbjct  161  CGGAGTGCGGCGGAGCTATGGCGGTCTGCCACAATCGAATTCCAAATCTCCTCCGTCTTC  220

Query  137  TTGTCAGCGATTGATGGAATTGGAATCTGAATTCAGTCCCCA  178
            || ||| |||||||||||||||||||||||||||||| ||||
Sbjct  221  TTCTCAACGATTGATGGAATTGGAATCTGAATTCAGTGCCCA  262



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9154845882


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5