BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947182
Length=1382
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35410.1 | Symbols: SOS2, SNRK3.11, CIPK24, ATSOS2 | Protein... 2259 0.0
> AT5G35410.1 | Symbols: SOS2, SNRK3.11, CIPK24, ATSOS2 | Protein
kinase superfamily protein | chr5:13634454-13638297 FORWARD
LENGTH=1757
Length=1757
Score = 2259 bits (1223), Expect = 0.0
Identities = 1329/1382 (96%), Gaps = 0/1382 (0%)
Strand=Plus/Plus
Query 1 TCTGGTAAAAATTTGTAAAGAATGACAAAGAAAATGAGGAGAGTGGGGAAGTACGAGGTT 60
|||| ||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 161 TCTGATAAAAGTTTGTAAAGAATGACAAAGAAAATGAGAAGAGTGGGCAAGTACGAGGTT 220
Query 61 GGTCGCACGGTAGGTGAAGGAACCTTTGCTAAGGTTAAGTTTGCGAGGAACACAGACACT 120
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 GGTCGCACAATAGGTGAAGGAACCTTTGCTAAGGTTAAGTTTGCGAGGAACACAGACACT 280
Query 121 GGTGAAAATGTTGCCATCAAAATTATGGCTAAGAGTACAATACTTAAGAACAGAATGGTT 180
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 GGTGATAATGTAGCCATCAAAATTATGGCTAAGAGTACAATACTTAAGAACAGAATGGTT 340
Query 181 GATCAGATAAAAAGAGAGATATCTATAATGAAGATTGTCCGTCACCCTAACATAGTGAGG 240
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 341 GATCAGATAAAAAGAGAGATATCTATAATGAAGATTGTTCGTCACCCGAACATAGTGAGG 400
Query 241 TTGTATGAGGTCTTGGCAAGTCCTTCAAAAATATATATAGTTTTGGAGTTTGTGACAGGA 300
||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 401 TTGTATGAGGTGTTGGCGAGTCCTTCGAAAATATATATAGTTTTGGAGTTTGTGACAGGA 460
Query 301 GGAGAGCTCTTTGATAGAATTGTTCACAATGGGAGACTTGAAGAAAGTGATTCTCGCAAA 360
|||||||||||||||||||||||||| || ||||| |||||||||||||| ||||| |||
Sbjct 461 GGAGAGCTCTTTGATAGAATTGTTCATAAAGGGAGGCTTGAAGAAAGTGAGTCTCGGAAA 520
Query 361 TACTTTCAACAGCTTGTAGATGCTATTGCTCATTGTCATTGCAAGGGTGTTTACCACCGT 420
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 521 TACTTTCAACAGCTTGTAGATGCTGTTGCTCATTGTCACTGCAAGGGTGTTTACCACCGT 580
Query 421 GACCTAAAGCCAGAAAATCTTTTACTCGATACAAATGGAAATCTGAAGGTTTCGGATTTC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 GACCTAAAGCCAGAAAATCTTTTACTCGATACAAATGGAAATCTGAAGGTTTCGGATTTC 640
Query 481 GGACTCAGTGCATTGCCTCAGCAAGGAGTAGAACTTCTGCGCACCACATGTGGAACTCCG 540
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 641 GGACTCAGTGCATTGCCTCAGGAAGGAGTAGAACTTCTGCGTACCACATGTGGAACTCCG 700
Query 541 AACTATGTAGCTCCTGAGGTACTTAGTGGCCAGGGTTACGATGGTTCAGCAGCAGATATT 600
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 701 AACTATGTAGCTCCAGAGGTACTTAGTGGACAGGGTTACGATGGTTCAGCAGCTGATATT 760
Query 601 TGGTCTTGCGGGGTTATTCTTTTCGTTATATTGGCTGGATATTTACCCTTTTCTGAGACG 660
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 761 TGGTCTTGCGGGGTTATTCTTTTCGTTATATTGGCTGGATATTTACCTTTTTCCGAGACG 820
Query 661 GATCTTCCAGGGTTGTACAGAAAAATAAATGCAGCAGAATTTTCTTGTCCACCATGGTTT 720
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 821 GATCTTCCAGGGTTGTACAGAAAAATAAATGCAGCAGAGTTTTCTTGTCCACCGTGGTTT 880
Query 721 TCTGCAGAAGTGAAGTTTTTAATTCATAGGATACTTGACCCCAATCCCAAAACACGTATT 780
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 881 TCCGCAGAAGTGAAGTTTTTAATACATAGGATACTTGACCCCAATCCCAAAACACGTATT 940
Query 781 CAAATTCAAGGAATCAGGAAAGATCCTTGGTTCAGAATAAATTATGTGCCTATCCGGGCA 840
|||||||||||||||| ||||||||||||||||||| |||||||||||||||| || |||
Sbjct 941 CAAATTCAAGGAATCAAGAAAGATCCTTGGTTCAGATTAAATTATGTGCCTATACGAGCA 1000
Query 841 AGGGAAGAGGAAGAAGTGAATTTGGATGATGTTCGTGCAGTTTTTGATGGAATTGAGGGC 900
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1001 AGGGAAGAAGAAGAAGTGAATTTGGATGATATTCGTGCAGTTTTTGATGGAATTGAGGGC 1060
Query 901 AGTTATGTAGCGGAGAATGTAGAGACCAAGGATGAAGGACCCCTGATGATGAATGCCTTT 960
||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 1061 AGTTATGTAGCGGAGAATGTAGAGAGAAATGATGAAGGGCCCCTGATGATGAATGCCTTT 1120
Query 961 GAGATGATTACCTTATCACAAGGCTTAAATTTATCAGCACTATTTGATAGGCGACAGGAT 1020
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1121 GAGATGATTACCTTATCACAAGGCTTAAATTTATCTGCACTATTTGACAGGCGACAGGAT 1180
Query 1021 TTTGTTAAAAGGCAAACCCGTTTTGTTTCTCGAAGGGCACCTAGTGAGATAATTGCTAAC 1080
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1181 TTTGTTAAAAGGCAAACCCGTTTTGTTTCTCGAAGGGAACCTAGTGAGATAATTGCTAAC 1240
Query 1081 ATTGAGGCTGTAGCGAACTCAATGGGTTTTAAGTCTCATACACGAAACTTCAAGACAAGG 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 ATTGAGGCTGTAGCGAACTCAATGGGTTTTAAGTCTCATACACGAAACTTCAAGACAAGG 1300
Query 1141 CTCGAGGGATTATCTTCGATCAAGGACGGGCAGTTAGCTGTTGTGATAGAGATTTACGAG 1200
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1301 CTCGAGGGATTATCTTCGATCAAGGCCGGACAGTTAGCTGTTGTGATAGAGATTTACGAG 1360
Query 1201 GTGGCACCATCGCTTTTCATGGTAGACGTAAGAAAGGCTGCTGGTGAAACTCTTGAATAT 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1361 GTGGCACCATCGCTTTTCATGGTAGACGTAAGAAAGGCTGCTGGTGAAACTCTTGAATAT 1420
Query 1261 CACAAGTTCTACAAGAAGTTATGTTCGAAACTGGAAAACATAATATGGAAAGCAAGAGAA 1320
|||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||
Sbjct 1421 CACAAGTTCTACAAGAAGCTATGTTCGAAACTGGAAAACATAATATGGAGGGCAACAGAA 1480
Query 1321 GGAATGCCAAAGTCAGAGCTTCTCAGAACAATCACGTTTTGATCCCAACTTAAGTCCAAT 1380
||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1481 GGAATACCAAAGTCAGAGATTCTCAGAACAATCACGTTTTGATCCCAACTTAAATCCAAT 1540
Query 1381 AA 1382
||
Sbjct 1541 AA 1542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68071939020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5