BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947186
Length=1180
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35460.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 1805 0.0
> AT5G35460.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2838 (InterPro:IPR021261);
Has 1807 Blast hits to 1807 proteins in 277 species:
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants
- 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:13672539-13674739 FORWARD LENGTH=1398
Length=1398
Score = 1805 bits (977), Expect = 0.0
Identities = 1058/1097 (96%), Gaps = 5/1097 (0%)
Strand=Plus/Plus
Query 45 GAAGATTCAAACTCCAATGGACTAGACTCTTTTGATGCTGTTAAACAACGTTTCAAGGAT 104
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 72 GAAGATTCAAACTCCAATGGACTAGACTCGTTTGATGCTGTTAAACAACGTTTCAAAGAT 131
Query 105 CGATCAAAGAAAGTTGTTCAGACAAGAGAGTTATTGTCTAAACAAGCGGTACAAACGCGT 164
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 132 CGATCAAAGAAAGTTGTTCAGACGAGAGAGTTGTTGTCTAAACAAGCGGTACAAACGCGT 191
Query 165 GAGATCTTGTCTAAACAAGCCGTTAAGATCGCTAAACAAGCCGAAGAACATGAGAGATTC 224
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 GAGATCTTATCGAAACAAGCCGTTAAGATCGCTAAACAAGCCGAAGAACATGAGAGATTC 251
Query 225 ATCAATAAGGTGACACATCTTGTTGGAGTGCTTGGATTTGGAGGTTTTTGTTTCCTACTT 284
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 252 ATCAATAAGGTGACACATCTCGTTGGTGTGCTTGGATTTGGAGGTTTTTGTTTCCTACTT 311
Query 285 GGTGCAAGACCTCAGGACATTCCTTTAGTTTACTGTTTCTTCTATGTGATCTTTGTTCCT 344
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 GGTGCAAGACCTCAAGACATTCCTTTAGTTTACTGTTTCTTCTATGTGATCTTTGTTCCT 371
Query 345 CTTCGATGGATATATTACCGGTTTAAGAAATGGCATTATTATCTTCTGGACTTTTGCTAC 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 CTTCGATGGATATATTACCGGTTTAAGAAATGGCATTATTATCTTCTGGACTTTTGCTAC 431
Query 405 TATGCCAATACAATCTTCTTGGTTGATCTTCTTCTGTATCCTAAGAATGAGAAGCTTTTC 464
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 432 TATGCCAATACAATCTTCTTGGTTGATCTTCTTCTGTATCCTAAGAATGAAAAGCTTTTC 491
Query 465 ATGGTTTGCTTTTCCTTTGCAGAGGGACCGTTGGCGTGGGCAATTATTGTGTGGCGTTGC 524
|||||||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||
Sbjct 492 ATGGTTTGCTTTTCCTTTGCTGAGGGACCATTGGCGTGGGCGATTATTGTCTGGCGTTGC 551
Query 525 AG-CTTGGTTTTTAGTTCGCCGGATAAGATTGTTAGTGTTCTTATACATCTCTTACCTGG 583
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 AGTCT-GGTTTTTAGTTCGCCGGATAAGATTGTTAGTGTTCTTATACATCTCTTACCTGG 610
Query 584 GCTCGTGTTCTTCACGATTAGGTGGTGGAATCCAGCGACCTTTGCAGCTATGCACCCTGT 643
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 611 GCTCGTGTTTTTCACGATTAGGTGGTGGAATCCAGCGACTTTTGCAGCTATGCACCCTGT 670
Query 644 AGGCACTGATCGTAGGGTTTCATGGCCTTATGTTGAAGACAAAGCTTACCTATTTACATG 703
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 671 AGGCACTGATCGTAGGGTTTCATGGCCTTATGTTGAAGACAAAGCTTACCTATTCACATG 730
Query 704 GCTGTTTCTTATCCCCTTGGTCGTTTATACTCTTTGGCAAGTGCTCTATTTTCTAATCGT 763
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 731 GCTGTTTCTCGTCCCCTTAGTCGTTTATACTCTTTGGCAAGTGCTCTATTTTCTAATCGT 790
Query 764 CAATGTCCTGCGTAGGCAGAGACTCCTAAGAGATCCTGAAGTTATGACTTCTTACAGAGA 823
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 791 CAATGTCCTGCGTAGGCAGAGACTCCTTAGAGATCCTGAAGTTATGACTTCTTACAGAGA 850
Query 824 GCTGTCGAAGAAAGCTGAAAAAGCAGACAATAAGTTGTGGCAGCTGAGCGGTCTGCTAGG 883
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 851 GCTGTCGAAGAAAGCTGAAAAGGCAAACAATAAGTTGTGGCAGCTGAGCGGTCTGCTAGG 910
Query 884 GGATCAGAACCGTATATGGATGTACATCCTATTCCAGGCCATCTTCACGGTTGCAACCAT 943
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 911 GGATCAGAATCGTATATGGATGTACATCCTATTCCAGGCCATCTTCACGGTGGCAACCAT 970
Query 944 GGCATTGACCGTACCGATCTTCCTATCTTATAGACTTCATCTGATCTTTCAAATCCTGAA 1003
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||
Sbjct 971 GGCATTGACCGTACCGATCTTCCTATCTTATAGACTTCATGTGATCTTTCAGATCCTAAA 1030
Query 1004 GATTTCTGCGGCAGTGTGGAACGGAGGGAGCTTTTTACTAGAGGTAATGCCACGGCAAGT 1063
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 GATTTCTGCGGCTGTGTGGAACGGAGGGAGCTTTTTACTAGAGGTAATGCCACGGCAAGT 1090
Query 1064 GATCCAGAAAGAGAAGAAGAA-A--GCAGAGATGCAGCCTATAGAGGAGCAGATACCACA 1120
||||||||||||||||||||| | || ||||||||||| |||||||||||||||| |||
Sbjct 1091 GATCCAGAAAGAGAAGAAGAAGAAAGCTGAGATGCAGCCGATAGAGGAGCAGATACTACA 1150
Query 1121 CCATGAACCTGTGTCAC 1137
|||||| |||||||||
Sbjct 1151 TCATGAAGCTGTGTCAC 1167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57931428930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5