BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947205

Length=481
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G35680.3 | Symbols:  | Nucleic acid-binding, OB-fold-like pr...   597    3e-170
  AT2G04520.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pr...   521    2e-147


> AT5G35680.3 | Symbols:  | Nucleic acid-binding, OB-fold-like 
protein | chr5:13857921-13859013 REVERSE LENGTH=758
Length=758

 Score =  597 bits (323),  Expect = 3e-170
 Identities = 365/386 (95%), Gaps = 0/386 (0%)
 Strand=Plus/Plus

Query  18   GAGACGATGCCgaagaacaaaggaaagggaggaaagaacaggaagagaggaaagaacgaa  77
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  136  GAGACGATGCCGAAGAACAAAGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAA  195

Query  78   gCTGATGACGAGAAGCGCGAGCTTATTTTCAAAGAAGATGGGCAAGAGTATGCACAAGTT  137
            ||||||||||| ||||| |||||||| |||||||||||||| ||||| || |||||||||
Sbjct  196  GCTGATGACGAAAAGCGAGAGCTTATATTCAAAGAAGATGGACAAGAATACGCACAAGTT  255

Query  138  CTTCGTATGCTCGGTAATGGCCGTTGTGATGTTATGTGCATTGACGGTGTTAAGCGTCTT  197
            ||||||||||||||||| || || || || ||||||||||||||||||||||||||||||
Sbjct  256  CTTCGTATGCTCGGTAACGGTCGATGCGACGTTATGTGCATTGACGGTGTTAAGCGTCTT  315

Query  198  TGCCATATCCGTGGTAAGATGCACAAGAAGGTTTGGATTGCAGCTGGTGACATCATACTT  257
            ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct  316  TGCCATATCCGTGGTAAGATGCATAAGAAGGTTTGGATTGCTGCTGGTGACATCATACTT  375

Query  258  GTTGGTCTGAGGGATTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGTCTGAT  317
            |||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct  376  GTTGGTCTAAGAGATTACCAGGATGATAAAGCTGATGTTATACTCAAGTATATGTCTGAT  435

Query  318  GAGGCTAGGCTTCTCAAGGCGTATGGTGAGCTTCCGGAGAACACTCGTCTTAATGAAGGT  377
            |||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct  436  GAGGCTAGGCTTCTTAAGGCGTATGGTGAGCTTCCGGAGAATACTCGTCTTAACGAAGGT  495

Query  378  ATTGTTGGTGATCTTGATGAAGATGA  403
            |||||||||||||||||||| |||||
Sbjct  496  ATTGTTGGTGATCTTGATGATGATGA  521


> AT2G04520.1 | Symbols:  | Nucleic acid-binding, OB-fold-like 
protein | chr2:1574592-1575863 REVERSE LENGTH=817
Length=817

 Score =  521 bits (282),  Expect = 2e-147
 Identities = 396/452 (88%), Gaps = 3/452 (1%)
 Strand=Plus/Plus

Query  24   ATGCCgaagaacaaaggaaagggaggaaagaacaggaagagaggaaagaacgaagCTGAT  83
            |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  170  ATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGAT  229

Query  84   GACGAGAAGCGCGAGCTTATTTTCAAAGAAGATGGGCAAGAGTATGCACAAGTTCTTCGT  143
            ||||||||| | |||||||| |||||||||||||| ||||| || |||||||| ||||||
Sbjct  230  GACGAGAAGAGAGAGCTTATATTCAAAGAAGATGGACAAGAATACGCACAAGTCCTTCGT  289

Query  144  ATGCTCGGTAATGGCCGTTGTGATGTTATGTGCATTGACGGTGTTAAGCGTCTTTGCCAT  203
            ||||| || |||||  | ||||| | |||||| || || ||    |||||||||||||||
Sbjct  290  ATGCTTGGAAATGGAAGATGTGAAGCTATGTGTATCGATGGAACCAAGCGTCTTTGCCAT  349

Query  204  ATCCGTGGTAAGATGCACAAGAAGGTTTGGATTGCAGCTGGTGACATCATACTTGTTGGT  263
            ||||||||||||||||| |||||||||||||||||||| ||||| ||  | |||||||||
Sbjct  350  ATCCGTGGTAAGATGCATAAGAAGGTTTGGATTGCAGCAGGTGATATTGTGCTTGTTGGT  409

Query  264  CTGAGGGATTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGTCTGATGAGGCT  323
             ||||||||||||| ||||||||||| ||||| ||||| ||||| |||||||||||||||
Sbjct  410  TTGAGGGATTACCAAGATGACAAAGCGGATGTGATCCTTAAGTACATGTCTGATGAGGCT  469

Query  324  AGGCTTCTCAAGGCGTATGGTGAGCTTCCGGAGAACACTCGTCTTAATGAAGGTATTGTT  383
            |||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct  470  AGGCTTCTTAAGGCTTATGGTGAGCTTCCAGAGAATACTCGTCTTAATGAAGGAATTGTT  529

Query  384  GGTGATCTTGATGAAGATGAAGAGAATGCGGGTGATGATTACATTGAGTTTGAGGACGAG  443
            ||||||||||| || ||||| || |||   | |||||| ||  |||||||||||||||| 
Sbjct  530  GGTGATCTTGAGGATGATGATGATAATAATGATGATGACTATGTTGAGTTTGAGGACGAA  589

Query  444  GATATTGATAGGATCTAAG--TTTGTTTTGTT  473
            ||||| |||||||||||||  ||||||| |||
Sbjct  590  GATATCGATAGGATCTAAGGCTTTGTTT-GTT  620



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22906771032


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5