BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947213

Length=343
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G35732.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   507    4e-143


> AT5G35732.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT2G04795.1); 
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae 
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants 
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI 
BLink). | chr5:13897940-13898387 FORWARD LENGTH=448
Length=448

 Score =  507 bits (274),  Expect = 4e-143
 Identities = 321/344 (93%), Gaps = 2/344 (1%)
 Strand=Plus/Plus

Query  1    TCAAGATCAGAGACATAGAGATGACGCAGATGCTTTCCGTACTCCGCCGTAACCTTCAAA  60
            ||||||||| ||||| |||||||||||||||||||||||||||||| || ||||||||||
Sbjct  2    TCAAGATCAAAGACAAAGAGATGACGCAGATGCTTTCCGTACTCCGTCGCAACCTTCAAA  61

Query  61   ACCTTCGTAAGAGCCCTCGCGTAGCTGACGAGACCGAGTTACCATCATCGAAT-GCAGGA  119
            ||||||||||||||||||||||||||||||| ||||||||||| ||||||| | |  || 
Sbjct  62   ACCTTCGTAAGAGCCCTCGCGTAGCTGACGATACCGAGTTACCTTCATCGACTAG-TGGC  120

Query  120  GCCGGGCCAGGAGTGGTAGCTAATGGAAGACGAGACGGGTTTAACTCCGTGATCATGCGG  179
            |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GCCGGGCCGGGAGTTGTAGCTAATGGAAGACGAGACGGGTTTAACTCCGTGATCATGCGG  180

Query  180  TTCCCGTTCTCGATCATCTCTTGCTTTGCGGTGCCGCGTGTTAGCGGGACAGATGGACTA  239
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  181  TTCCCGTTCTCGATCATCTCTTGCTTTGCGGTGCCCCGTGTTAGCGGGACAGATGGACTA  240

Query  240  TGGATGTCCGGAGATTATGGCAGTGTCTCGGAGATTAACCATCTTATGGTTAGTGATAGC  299
            ||| |||| ||||||||||| ||  |||||||| ||||||||||||||||||||||||| 
Sbjct  241  TGGGTGTCTGGAGATTATGGTAGCATCTCGGAGGTTAACCATCTTATGGTTAGTGATAGT  300

Query  300  ATGAGATACGCCATTTTAATGTAATAAACATATTTGTAGTATAG  343
            |||||||||||||||||||||||||||||||| || ||||||||
Sbjct  301  ATGAGATACGCCATTTTAATGTAATAAACATACTTATAGTATAG  344



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16035411931


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5