BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947222

Length=367
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G07460.2 | Symbols:  | Protein of unknown function, DUF538 |...   399    7e-111


> AT3G07460.2 | Symbols:  | Protein of unknown function, DUF538 
| chr3:2384418-2385713 REVERSE LENGTH=1038
Length=1038

 Score =  399 bits (216),  Expect = 7e-111
 Identities = 278/306 (91%), Gaps = 12/306 (4%)
 Strand=Plus/Plus

Query  65   TGGTTCAGTCTTCGATGTTGCCATTGTATCAAGTAGATCAAACTCTTGTAAGAAACATTG  124
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct  555  TGGTTCAGTCTTCGATGTTGCCATTGTATCAAGTAGATCAAACTCTTGGAAGAAACACTG  614

Query  125  TTTTAT-AGGAGTTGAAAAAATGTTGTTATACTATACCAGAAAGATGAAAAAGATAGATA  183
            ||| |  |||||||||| ||||||||||||||||||| ||||||||| ||||||||||||
Sbjct  615  TTT-AGCAGGAGTTGAAGAAATGTTGTTATACTATACGAGAAAGATGGAAAAGATAGATA  673

Query  184  GATGTTCTCAGCTGTTCTTGAAGATACTTTATACTGTTTTGATCTCAAATCTTAGGCATG  243
            |||| ||||| || |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  674  GATGCTCTCATCTATTCTTGAAGATACTTTCTACTGTTTTGATCTCAAATCTTAGGCATG  733

Query  244  ATTCATGGTCGGATGCTTCATTCTTTTCTTTCCC--ATACCAGTGTTGTTTGTGCATTGC  301
            |||||||||| ||||||||||||||| | |||||  || |||||||||||| ||||||||
Sbjct  734  ATTCATGGTCAGATGCTTCATTCTTTCCCTTCCCCCATCCCAGTGTTGTTTCTGCATTGC  793

Query  302  TTTCT-----T--CGAGGG-GACAAAACCGAGAGAATCTGTGAGCGGAAGTTAGACGGTA  353
            |||||     |  |||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct  794  TTTCTCCAGATTGCGAGGGTGACAGAACCGAGAGAATCTGTGAGCGGAAGTTAGACGGTA  853

Query  354  ACAACG  359
            ||||||
Sbjct  854  ACAACG  859



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17241837907


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5