BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947226

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G38430.1 | Symbols: ATROPGEF1, ROPGEF1 | rho guanyl-nucleoti...   270    8e-72


> AT4G38430.1 | Symbols: ATROPGEF1, ROPGEF1 | rho guanyl-nucleotide 
exchange factor 1 | chr4:17986466-17988807 FORWARD LENGTH=1972
Length=1972

 Score =  270 bits (146),  Expect = 8e-72
 Identities = 175/189 (93%), Gaps = 2/189 (1%)
 Strand=Plus/Plus

Query  1    GAGGCGGAACTTATGAGGTCATGGAGACCCGTCCACGTTCTGATCTCTATGCCAATCTCT  60
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| 
Sbjct  701  GAGGCGGAACTTATGAGATCATGGAGACCCGTCCACGTTCTGATCTCTATGCCAATCTCC  760

Query  61   CTGCTCTCAAGAAGCTCGATGTTATGTTGATCGATATACTTGTCGCTTTCTCCGATACCG  120
            ||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||| |
Sbjct  761  CTGCTCTCAAGAAGCTCGATGCTATGTTGATCGATATGCTTGACGCTTTCTCCGATACTG  820

Query  121  AATTCTGGTATACTAATCGTGGCATAGTTCTTGGTGAATGTGAAAAGGATTCTTACAATT  180
            | |||||||| ||| |||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct  821  AGTTCTGGTACACTGATCGCGGCATAGTTCTTGGTGATTGTGACAAGGATTCTTACAATT  880

Query  181  C-CCGAGCT  188
            | || ||||
Sbjct  881  CTCC-AGCT  888


 Score =  252 bits (136),  Expect = 3e-66
 Identities = 146/151 (97%), Gaps = 0/151 (0%)
 Strand=Plus/Plus

Query  188   TCCACCTAACGGTTTGTCAGAAGAGGCCAGGAAGAAACTGCAGCAGTGTCGGGACTTTGC  247
             ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  933   TCCGCCTAACGGTTTGTCAGAAGAGGCCAGGAAGAAACTGCAGCAGTGTCGGGACTTTGC  992

Query  248   TAACCAGATTCTCAAGGCTGCATTGGCAATTAACAGCGGCGTGCTTGCCGAAACGGAGAT  307
             |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct  993   TAACCAGATTCTCAAGGCTGCATTGGCAATTAACAGTGGCGTGCTTGCCGAAATGGAGAT  1052

Query  308   TCCCAACCCTTACTTGGAGACATTGCCCAAG  338
             |||| |||||||||||||||| |||||||||
Sbjct  1053  TCCCGACCCTTACTTGGAGACTTTGCCCAAG  1083



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26071522293


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5