BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947235

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G41660.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   230    1e-59


> AT5G41660.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein 
match is: unknown protein (TAIR:AT3G44430.1); Has 1807 
Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria 
- 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses 
- 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:16656708-16658405 
FORWARD LENGTH=1551
Length=1551

 Score =  230 bits (124),  Expect = 1e-59
 Identities = 339/437 (78%), Gaps = 38/437 (9%)
 Strand=Plus/Plus

Query  79    AACCTTTGCAACCATCCTCTTCAATAGAGAGAACTATTGCTAGACCTCCGACC-T--CTT  135
             ||| |||| || |||||||||  |||||||||||| ||| | |  ||| |||| |   ||
Sbjct  1130  AACTTTTG-AATCATCCTCTTTTATAGAGAGAACTTTTGATTGGTCTCTGACCTTAAGTT  1188

Query  136   TGCGGAGAAACCATGTTGGTTTCC-TAATCTTCTTTTTAGAAGCGACGTGCATT-GAGTC  193
             |||  | ||||||| |||| | || ||| |  |||| |||||||  ||||  || ||| |
Sbjct  1189  TGC--A-AAACCAT-TTGGATACCTTAACCACCTTTGTAGAAGCCTCGTG-TTTCGAGCC  1243

Query  194   GAT-ATCACCCAAGGTCAAGGAATTTTTATCAACGTCACTA-GCCCTT-TATGGAAATGT  250
             | | || | ||||||| || || ||||| |||||||||||| |  ||| | ||| |  ||
Sbjct  1244  GGTGAT-ATCCAAGGTTAAAGACTTTTTCTCAACGTCACTATG-TCTTGTTTGG-ACCGT  1300

Query  251   GACCATTCAACAATGTCCCGAAATCCTCGTGGAATTGTCTTCGACTCACCATTCTATCGT  310
             |||||||||||||| ||||||| |  ||||||||||||||||||||||||||||| ||| 
Sbjct  1301  GACCATTCAACAATCTCCCGAAGTATTCGTGGAATTGTCTTCGACTCACCATTCTCTCGC  1360

Query  311   TTGTGGCAAGCTACTATATTGTTCTTGTCTCCGATGTTTGGACCTTTCG-TCGAATTACT  369
             |||||||||| |||||| ||||||||||||||||||| |||| ||  || |||| ||| |
Sbjct  1361  TTGTGGCAAGTTACTATCTTGTTCTTGTCTCCGATGTATGGATCTA-CGGTCGATTTA-T  1418

Query  370   C-TATC-TATGTTA-TCTACCAATCGCTTTT-A-AGAG-TATTAGTTGCTATTTTTGTTG  423
             | |||| | | ||  | | ||| || ||| | | |||| || || ||| |||||  | ||
Sbjct  1419  CCTATCCT-T-TTCCTTTTCCATTCTCTTGTGAGAGAGCTAGTA-TTGTTATTT--GATG  1473

Query  424   TATCCAACGATGAGGTTGATGTTTACT-TAA-CATTTGTACTTGCTATGGCTTGAAT--G  479
             | |||||| |||||||||||||||  | ||| | ||||||||  |||||| |||| |  |
Sbjct  1474  TTTCCAACAATGAGGTTGATGTTTG-TGTAAAC-TTTGTACTACCTATGGGTTGAGTTTG  1531

Query  480   AATGAAA-TATGTTTTG  495
             ||||||| |||| ||||
Sbjct  1532  AATGAAAGTATGCTTTG  1548



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23760751531


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5