BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947238

Length=661
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G01335.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   121    1e-26
  AT4G01340.1 | Symbols:  | CHP-rich zinc finger protein-related ...   110    2e-23


> AT4G01335.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
endomembrane system; BEST Arabidopsis thaliana protein match 
is: CHP-rich zinc finger protein-related (TAIR:AT4G01340.1); 
Has 13 Blast hits to 13 proteins in 2 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:553393-554089 
FORWARD LENGTH=583
Length=583

 Score =  121 bits (65),  Expect = 1e-26
 Identities = 91/103 (88%), Gaps = 4/103 (4%)
 Strand=Plus/Plus

Query  235  TAGTTACCCGAAAGACGAGGAATTTGAACGGTTTGGGATTCCATCCAAGAGGGGGAAGAG  294
            |||||||  ||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct  207  TAGTTACATGAAAGACGAGGGATTTGAACGGTTTGGGATTCCATCCAAGAGGGG-AAGAG  265

Query  295  ACTGGGAAGA---TGATTTATCACTTATTAAACTGTCCTTGAA  334
            ||||||||||   ||||||||||||||   |||||| | ||||
Sbjct  266  ACTGGGAAGACAATGATTTATCACTTAACCAACTGTTCATGAA  308


> AT4G01340.1 | Symbols:  | CHP-rich zinc finger protein-related 
| chr4:554539-556961 FORWARD LENGTH=681
Length=681

 Score =  110 bits (59),  Expect = 2e-23
 Identities = 62/63 (98%), Gaps = 1/63 (2%)
 Strand=Plus/Plus

Query  235  TAGTTACCCGAAAGACGAGGAATTTGAACGGTTTGGGATTCCATCCAAGAGGGGGAAGAG  294
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  561  TAGTTACCCGAAAGACGAGGAATTTGAACGGTTTGGGATTCCATCCAAGAGGGG-AAGAG  619

Query  295  ACT  297
            |||
Sbjct  620  ACT  622



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31948917492


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5