BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947253

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G00895.1 | Symbols:  | ATPase, F1 complex, OSCP/delta subuni...   383    6e-106


> AT4G00895.1 | Symbols:  | ATPase, F1 complex, OSCP/delta subunit 
protein | chr4:381788-382643 FORWARD LENGTH=856
Length=856

 Score =  383 bits (207),  Expect = 6e-106
 Identities = 283/316 (90%), Gaps = 20/316 (6%)
 Strand=Plus/Plus

Query  14   AAGATTGATGGAGTTTCTTGTGGGAGAAGAAAAGATGAGGAACAAGGTCTTAGTCAATGA  73
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  398  AAGATTGATGGAGTTTCTTGTGGGAGAAGAAAAGAAGAGGAACAAGGTCTTAGTCAATGA  457

Query  74   TGTTG---AGAGAGGTAAATTGGGTAAACACTTGAAGGGCTTGGTCAAGATGTTGATTAC  130
            |||||   ||||||||||||| ||||||||||| |||||||||||||||||||||||| |
Sbjct  458  TGTTGTTGAGAGAGGTAAATTTGGTAAACACTTCAAGGGCTTGGTCAAGATGTTGATTGC  517

Query  131  AAGAGGTAAATCTGGGATTCTCGTTGATGTTTTAATGGAATTTGAGAGAATCTGTACTGA  190
            ||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||
Sbjct  518  AAGAGGTAAATCTGGGATTCTGGTGGATGTTTTAATGGAATTTGAGAGAATCTGTAATGA  577

Query  191  ATTGGTCACAACAAAACTTTGTCTGGGTTTCTTGATGATACAAAAGATTGTAAAAGAGAT  250
            ||||||| ||| ||||||| |||||||||||||||||||||||||||||  |       |
Sbjct  578  ATTGGTCTCAAAAAAACTT-GTCTGGGTTTCTTGATGATACAAAAGATT--A-------T  627

Query  251  CATATCTAATCCAAAGTTTGCTTATTTACTCAAGAAATGTTACACTACTTGTCTTTAGTT  310
             ||  |||||||||||||||||| ||||   | ||||||||||||||||||||||| |||
Sbjct  628  -AT--CTAATCCAAAGTTTGCTTCTTTA---A-GAAATGTTACACTACTTGTCTTTGGTT  680

Query  311  AATGTTTTTATGGAAT  326
             ||||||| |||||||
Sbjct  681  GATGTTTTAATGGAAT  696



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15281395696


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5