BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947266
Length=278
Score E
Sequences producing significant alignments: (Bits) Value
AT5G36200.1 | Symbols: | F-box and associated interaction doma... 209 9e-54
> AT5G36200.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14244106-14246296 REVERSE LENGTH=1416
Length=1416
Score = 209 bits (113), Expect = 9e-54
Identities = 177/206 (86%), Gaps = 11/206 (5%)
Strand=Plus/Plus
Query 16 GTGGCCATGGTGATGGATTATAAGGTTTATTTTATGAGTGTTAATCTCCATGGAATTCAC 75
|||| |||| ||||||||| |||||||||||| ||||| || ||||||||| ||||||||
Sbjct 178 GTGGTCATGATGATGGATTCTAAGGTTTATTTAATGAGCGTCAATCTCCATAGAATTCAC 237
Query 76 AAA-AAGGACGACGACAACAACGTTAAATCATCTATCATACATAAAGCTAAACTCATTAG 134
||| || |||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 238 AAAGAA-AACGACGACAACAACATTAAATCATCTATCATGCATAAAGCTAAACTCATTAG 296
Query 135 CCTAAACGATGATGCAGATCATGACCTAGTCAATAATATAGATACAATTTTTCACTGCAA 194
|||||||||||||| | ||| || | |||||||| | ||| |||||||||||||||
Sbjct 297 CCTAAACGATGATG-A---CAT-AC-T---CAATAATACATATATAATTTTTCACTGCAA 347
Query 195 TGGTATATTGTTACTGTTATGCATCA 220
|||| || ||||| ||||| || |||
Sbjct 348 TGGTTTACTGTTATTGTTAGGCTTCA 373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12768008246
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5